Variant report

Variant	rs8117447
Chromosome Location	chr20:22506727-22506728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22504029..22508183-chr20:22508340..22510510,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12481297	0.88[EUR][1000 genomes]
rs2404167	0.96[EUR][1000 genomes]
rs4815115	0.84[ASN][1000 genomes]
rs4815116	0.96[EUR][1000 genomes]
rs4815117	0.96[EUR][1000 genomes]
rs6036134	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036137	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6036138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6036140	0.86[EUR][1000 genomes]
rs6036141	0.86[EUR][1000 genomes]
rs6036142	0.86[EUR][1000 genomes]
rs6048146	1.00[ASN][1000 genomes]
rs6048147	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6048148	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6048153	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6048155	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048160	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6048162	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6048163	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6048166	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6048167	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6048168	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6048169	0.96[EUR][1000 genomes]
rs6048171	0.86[EUR][1000 genomes]
rs6048172	0.86[EUR][1000 genomes]
rs6075923	0.92[EUR][1000 genomes]
rs6075924	0.81[EUR][1000 genomes]
rs6082725	0.94[ASN][1000 genomes]
rs6082733	0.96[EUR][1000 genomes]
rs6082734	0.91[EUR][1000 genomes]
rs6082735	0.96[EUR][1000 genomes]
rs6106520	0.86[EUR][1000 genomes]
rs73902850	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs945981	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066578	chr20:22472671-22513844	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22503800-22506800	Enhancers	Pancreas	Pancrea
2	chr20:22505400-22510400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr20:22505600-22509800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr20:22505600-22512200	Weak transcription	A549	lung
5	chr20:22506000-22514200	Weak transcription	Stomach Mucosa	stomach
6	chr20:22506600-22506800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr20:22506600-22506800	Flanking Active TSS	HepG2	liver
8	chr20:22506600-22508800	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links