Variant report

Variant	rs6048153
Chromosome Location	chr20:22502301-22502302
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12481297	0.86[EUR][1000 genomes]
rs2404167	0.94[EUR][1000 genomes]
rs4815116	0.94[EUR][1000 genomes]
rs4815117	0.94[EUR][1000 genomes]
rs6036134	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6036137	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036140	0.84[EUR][1000 genomes]
rs6036141	0.84[EUR][1000 genomes]
rs6036142	0.84[EUR][1000 genomes]
rs6048146	0.94[ASN][1000 genomes]
rs6048147	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6048148	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6048155	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6048160	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6048162	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6048163	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6048166	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6048167	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6048168	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6048169	0.94[EUR][1000 genomes]
rs6048171	0.84[EUR][1000 genomes]
rs6048172	0.84[EUR][1000 genomes]
rs6075923	0.94[EUR][1000 genomes]
rs6082725	0.88[ASN][1000 genomes]
rs6082733	0.94[EUR][1000 genomes]
rs6082734	0.94[EUR][1000 genomes]
rs6082735	0.94[EUR][1000 genomes]
rs6106520	0.84[EUR][1000 genomes]
rs73902850	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73902875	0.82[EUR][1000 genomes]
rs8117447	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs945981	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066578	chr20:22472671-22513844	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22496200-22503800	Weak transcription	Pancreas	Pancrea
2	chr20:22498200-22503800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr20:22500600-22503200	Weak transcription	Liver	Liver
4	chr20:22501200-22502400	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links