Variant report

Variant	rs73902850
Chromosome Location	chr20:22510539-22510540
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12481297	0.88[EUR][1000 genomes]
rs2404167	0.96[EUR][1000 genomes]
rs4815116	0.96[EUR][1000 genomes]
rs4815117	0.96[EUR][1000 genomes]
rs6036134	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6036137	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6036138	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6036140	0.86[EUR][1000 genomes]
rs6036141	0.86[EUR][1000 genomes]
rs6036142	0.86[EUR][1000 genomes]
rs6048146	0.81[ASN][1000 genomes]
rs6048147	0.81[ASN][1000 genomes]
rs6048148	0.81[ASN][1000 genomes]
rs6048153	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6048155	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6048160	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6048162	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6048163	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048166	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6048167	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6048168	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6048169	0.96[EUR][1000 genomes]
rs6048171	0.86[EUR][1000 genomes]
rs6048172	0.86[EUR][1000 genomes]
rs6075923	0.92[EUR][1000 genomes]
rs6075924	0.81[EUR][1000 genomes]
rs6082733	0.96[EUR][1000 genomes]
rs6082734	0.91[EUR][1000 genomes]
rs6082735	0.96[EUR][1000 genomes]
rs6106520	0.86[EUR][1000 genomes]
rs8117447	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs945981	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066578	chr20:22472671-22513844	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22505600-22512200	Weak transcription	A549	lung
2	chr20:22506000-22514200	Weak transcription	Stomach Mucosa	stomach
3	chr20:22506800-22519000	Enhancers	HepG2	liver
4	chr20:22509200-22510600	Enhancers	Liver	Liver
5	chr20:22509600-22511000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr20:22509600-22511600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr20:22509800-22510600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr20:22509800-22511000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr20:22509800-22511000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr20:22509800-22511200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr20:22509800-22511400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr20:22509800-22511600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr20:22510000-22510600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr20:22510000-22510600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr20:22510000-22510600	Enhancers	Pancreas	Pancrea
16	chr20:22510000-22511000	Enhancers	H9 Cell Line	embryonic stem cell
17	chr20:22510000-22511800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr20:22510000-22512000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr20:22510200-22511200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr20:22510400-22511000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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