Variant report

Variant	rs945981
Chromosome Location	chr20:22510261-22510262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22504029..22508183-chr20:22508340..22510510,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11905577	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12481297	0.88[EUR][1000 genomes]
rs13040491	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2152936	0.96[AFR][1000 genomes]
rs2404167	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4813459	0.97[AFR][1000 genomes]
rs4815116	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4815117	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4815126	0.87[AMR][1000 genomes]
rs6036137	0.94[EUR][1000 genomes]
rs6036138	0.94[EUR][1000 genomes]
rs6036140	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6036141	0.90[EUR][1000 genomes]
rs6036142	0.90[EUR][1000 genomes]
rs6048153	0.94[EUR][1000 genomes]
rs6048155	0.92[EUR][1000 genomes]
rs6048160	0.96[EUR][1000 genomes]
rs6048162	0.96[EUR][1000 genomes]
rs6048163	0.96[EUR][1000 genomes]
rs6048166	0.94[EUR][1000 genomes]
rs6048167	0.94[EUR][1000 genomes]
rs6048168	0.94[EUR][1000 genomes]
rs6048169	0.96[EUR][1000 genomes]
rs6048171	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6048172	0.90[EUR][1000 genomes]
rs6075923	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6075924	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6082727	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6082733	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6082734	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6082735	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6106520	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73902850	0.96[EUR][1000 genomes]
rs73902875	0.84[EUR][1000 genomes]
rs8117447	0.96[EUR][1000 genomes]
rs952690	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066578	chr20:22472671-22513844	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22505400-22510400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:22505600-22512200	Weak transcription	A549	lung
3	chr20:22506000-22514200	Weak transcription	Stomach Mucosa	stomach
4	chr20:22506800-22519000	Enhancers	HepG2	liver
5	chr20:22509200-22510600	Enhancers	Liver	Liver
6	chr20:22509600-22511000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr20:22509600-22511600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr20:22509800-22510600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr20:22509800-22511000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr20:22509800-22511000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr20:22509800-22511200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr20:22509800-22511400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr20:22509800-22511600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr20:22510000-22510600	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr20:22510000-22510600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr20:22510000-22510600	Enhancers	Pancreas	Pancrea
17	chr20:22510000-22511000	Enhancers	H9 Cell Line	embryonic stem cell
18	chr20:22510000-22511800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr20:22510000-22512000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr20:22510200-22511200	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links