Variant report

Variant	rs952690
Chromosome Location	chr20:22518523-22518524
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1203867	0.83[EUR][1000 genomes]
rs1203879	0.80[YRI][hapmap]
rs1203881	0.80[YRI][hapmap]
rs1209523	1.00[CEU][hapmap]
rs12481297	0.86[EUR][1000 genomes]
rs13040491	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1337919	1.00[CEU][hapmap]
rs2152936	0.82[AFR][1000 genomes]
rs2404167	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4519600	0.83[EUR][1000 genomes]
rs4813459	0.83[AFR][1000 genomes]
rs4815116	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4815117	0.84[AMR][1000 genomes]
rs4815126	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59061776	0.90[EUR][1000 genomes]
rs6036140	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6036141	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6036142	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6036143	0.83[EUR][1000 genomes]
rs6036144	0.81[EUR][1000 genomes]
rs6048171	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6048172	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6048179	0.81[EUR][1000 genomes]
rs6048180	0.81[EUR][1000 genomes]
rs6048209	1.00[CEU][hapmap]
rs6075924	0.87[AMR][1000 genomes]
rs6082733	0.83[AMR][1000 genomes]
rs6082734	0.84[AMR][1000 genomes]
rs6082735	0.87[AMR][1000 genomes]
rs6082743	0.83[EUR][1000 genomes]
rs6106520	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61520093	0.92[EUR][1000 genomes]
rs73902875	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73902879	0.92[EUR][1000 genomes]
rs945981	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs945982	0.82[AMR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22506800-22519000	Enhancers	HepG2	liver
2	chr20:22510600-22521600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:22515000-22544200	Weak transcription	Pancreas	Pancrea
4	chr20:22518200-22518600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr20:22518400-22518600	Flanking Active TSS	A549	lung

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