Variant report

Variant	rs6048209
Chromosome Location	chr20:22571083-22571084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1055080	1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs1203884	0.81[TSI][hapmap]
rs1203905	1.00[JPT][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs1203907	1.00[JPT][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs1203910	0.89[EUR][1000 genomes]
rs1203915	0.96[EUR][1000 genomes]
rs1209523	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.98[EUR][1000 genomes]
rs1337918	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1337919	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1337920	0.96[EUR][1000 genomes]
rs1337921	0.96[EUR][1000 genomes]
rs16984154	0.90[ASN][1000 genomes]
rs1800847	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1974	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2003076	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2277764	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4815127	0.86[TSI][hapmap]
rs6036152	0.81[EUR][1000 genomes]
rs6036157	0.98[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6036158	0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6048205	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs6048206	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs6048216	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7266093	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs8123991	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs910959	0.98[AFR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22569600-22571200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
2	chr20:22570000-22571200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
3	chr20:22570400-22571200	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
4	chr20:22570400-22571200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
5	chr20:22570400-22571600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
6	chr20:22570400-22572400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
7	chr20:22570600-22572600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
8	chr20:22570800-22572600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
9	chr20:22571000-22572600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell

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