Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1055080	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1203896	0.81[AMR][1000 genomes]
rs1203898	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1203902	0.81[ASN][1000 genomes]
rs1203905	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1203907	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1203910	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1203915	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1203918	0.92[ASN][1000 genomes]
rs1203919	0.91[ASN][1000 genomes]
rs1209523	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1337918	0.96[EUR][1000 genomes]
rs1337919	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs1337921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1800847	0.87[EUR][1000 genomes]
rs2277764	0.93[EUR][1000 genomes]
rs6048205	1.00[JPT][hapmap]
rs6048206	1.00[JPT][hapmap]
rs6048209	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs8123991	0.93[EUR][1000 genomes]
rs910958	0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22570400-22571600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
2	chr20:22570400-22572400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
3	chr20:22570600-22572600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr20:22570800-22572600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
5	chr20:22571000-22572600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
6	chr20:22571200-22571400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
7	chr20:22571200-22571400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
8	chr20:22571200-22571600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
9	chr20:22571200-22571800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr20:22571200-22572000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr20:22571200-22572200	Enhancers	H9 Cell Line	embryonic stem cell

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