Variant report

Variant	rs1203902
Chromosome Location	chr20:22559124-22559125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1055080	0.90[ASN][1000 genomes]
rs1203899	0.81[ASN][1000 genomes]
rs1203905	0.93[ASN][1000 genomes]
rs1203907	0.93[ASN][1000 genomes]
rs1203910	0.87[ASN][1000 genomes]
rs1203915	0.80[ASN][1000 genomes]
rs1209523	0.86[ASN][1000 genomes]
rs1337920	0.81[ASN][1000 genomes]
rs1337921	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22555200-22560400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
2	chr20:22555400-22559200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
3	chr20:22555600-22559200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr20:22555600-22559200	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr20:22556800-22559200	Active TSS	Gastric	stomach
6	chr20:22556800-22559400	Bivalent/Poised TSS	Fetal Stomach	stomach
7	chr20:22556800-22560800	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr20:22557000-22559200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr20:22557200-22559200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
10	chr20:22557400-22559400	Bivalent/Poised TSS	Stomach Mucosa	stomach
11	chr20:22557400-22559600	Active TSS	Liver	Liver
12	chr20:22557400-22560400	Active TSS	Pancreas	Pancrea
13	chr20:22557800-22559400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
14	chr20:22558000-22559200	Bivalent/Poised TSS	HepG2	liver
15	chr20:22558200-22560000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr20:22558200-22560200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr20:22558400-22559200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr20:22558400-22559200	Bivalent Enhancer	Esophagus	oesophagus
19	chr20:22558400-22559400	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
20	chr20:22558400-22560000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr20:22558400-22560000	Bivalent Enhancer	Adipose Nuclei	Adipose
22	chr20:22558400-22560000	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
23	chr20:22558600-22559200	Bivalent Enhancer	Spleen	Spleen
24	chr20:22558600-22559400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
25	chr20:22558600-22559400	Bivalent Enhancer	HMEC	breast
26	chr20:22558600-22559600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
27	chr20:22558600-22559800	Bivalent/Poised TSS	Fetal Lung	lung
28	chr20:22558600-22560000	Bivalent Enhancer	Left Ventricle	heart
29	chr20:22558600-22560400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr20:22558800-22559200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
31	chr20:22558800-22559200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
32	chr20:22558800-22559200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
33	chr20:22558800-22559600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
34	chr20:22558800-22559600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr20:22558800-22559600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr20:22558800-22559600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
37	chr20:22558800-22559800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
38	chr20:22558800-22560000	Bivalent/Poised TSS	NHEK	skin
39	chr20:22559000-22559200	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
40	chr20:22559000-22559200	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
41	chr20:22559000-22559200	Flanking Bivalent TSS/Enh	Psoas Muscle	Psoas
42	chr20:22559000-22559200	Bivalent/Poised TSS	Right Ventricle	heart
43	chr20:22559000-22559200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
44	chr20:22559000-22559200	Flanking Bivalent TSS/Enh	HSMM	muscle
45	chr20:22559000-22559400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
46	chr20:22559000-22559400	Bivalent Enhancer	Brain Cingulate Gyrus	brain
47	chr20:22559000-22559400	Bivalent Enhancer	Fetal Brain Male	brain
48	chr20:22559000-22559600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
49	chr20:22559000-22559600	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
50	chr20:22559000-22559600	Active TSS	A549	lung

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