Variant report

Variant	rs1203905
Chromosome Location	chr20:22560689-22560690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:30)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:30 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYBL2	chr20:22560678-22561625	HepG2	liver:	n/a	n/a
2	MAFK	chr20:22560601-22560967	HepG2	liver:	n/a	n/a
3	MAFF	chr20:22560603-22560968	HepG2	liver:	n/a	n/a
4	BCL3	chr20:22560219-22561430	A549	lung:	n/a	n/a
5	HEY1	chr20:22560360-22561608	HepG2	liver:	n/a	n/a
6	MBD4	chr20:22560319-22561987	HepG2	liver:	n/a	n/a
7	MAFK	chr20:22560604-22561055	HepG2	liver:	n/a	n/a
8	POLR2A	chr20:22560241-22562821	HepG2	liver:	n/a	n/a
9	TCF12	chr20:22560221-22561355	A549	lung:	n/a	n/a
10	POLR2A	chr20:22559127-22561986	HepG2	liver:	n/a	n/a
11	ELF1	chr20:22560389-22561188	A549	lung:	n/a	n/a
12	POLR2A	chr20:22560339-22562149	HepG2	liver:	n/a	n/a
13	POLR2A	chr20:22560316-22561511	HepG2	liver:	n/a	n/a
14	POLR2A	chr20:22560347-22560840	A549	lung:	n/a	n/a
15	SUZ12	chr20:22560362-22561226	H1-hESC	embryonic stem cell:	n/a	n/a
16	JUND	chr20:22560325-22560926	A549	lung:	n/a	n/a
17	SUZ12	chr20:22556202-22561602	NT2-D1	testis:	n/a	n/a
18	POLR2A	chr20:22559892-22561492	PANC-1	pancreas:	n/a	n/a
19	MBD4	chr20:22560307-22561593	HepG2	liver:	n/a	n/a
20	FOSL2	chr20:22560273-22561389	HepG2	liver:	n/a	n/a
21	POLR2A	chr20:22560334-22560850	A549	lung:	n/a	n/a
22	BCL3	chr20:22560096-22561603	A549	lung:	n/a	chr20:22560208-22560221
23	POLR2A	chr20:22560333-22561993	HepG2	liver:	n/a	n/a
24	POLR2A	chr20:22558301-22561412	PANC-1	pancreas:	n/a	n/a
25	POLR2A	chr20:22560642-22560826	A549	lung:	n/a	n/a
26	NFIC	chr20:22560555-22561411	HepG2	liver:	n/a	n/a
27	JUND	chr20:22560271-22561257	A549	lung:	n/a	n/a
28	POLR2A	chr20:22560456-22562225	K562	blood:	n/a	n/a
29	POLR2A	chr20:22560284-22561692	HepG2	liver:	n/a	n/a
30	POLR2A	chr20:22560380-22560899	H1-neurons	neurons:	n/a	n/a

No data

Variant related genes	Relation type
LINC00261	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1055080	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11087388	0.81[EUR][1000 genomes]
rs1203875	0.81[AFR][1000 genomes]
rs1203877	0.81[AFR][1000 genomes]
rs1203880	0.81[AFR][1000 genomes]
rs1203881	0.81[AFR][1000 genomes]
rs1203884	0.94[GIH][hapmap];0.94[TSI][hapmap]
rs1203889	0.81[AFR][1000 genomes]
rs1203892	0.81[AFR][1000 genomes]
rs1203895	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1203896	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1203898	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1203899	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1203902	0.93[ASN][1000 genomes]
rs1203907	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203910	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1203915	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1203918	0.82[ASN][1000 genomes]
rs1203919	0.81[ASN][1000 genomes]
rs1209523	0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1337918	0.83[EUR][1000 genomes]
rs1337919	1.00[JPT][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs1337920	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1337921	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1974	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2277764	0.84[EUR][1000 genomes]
rs4815127	0.87[TSI][hapmap]
rs6036152	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6048197	0.81[EUR][1000 genomes]
rs6048199	0.81[EUR][1000 genomes]
rs6048200	0.81[EUR][1000 genomes]
rs6048202	0.83[EUR][1000 genomes]
rs6048205	0.87[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.84[ASN][1000 genomes]
rs6048206	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6048209	1.00[JPT][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs6113722	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72470563	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73300990	0.81[EUR][1000 genomes]
rs73300993	0.81[EUR][1000 genomes]
rs8123991	0.81[EUR][1000 genomes]
rs910958	0.85[ASN][1000 genomes]
rs945982	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22556800-22560800	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr20:22559200-22562200	Weak transcription	Gastric	stomach
3	chr20:22559800-22560800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr20:22560000-22560800	Enhancers	Liver	Liver
5	chr20:22560000-22560800	Enhancers	HepG2	liver
6	chr20:22560000-22561200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
7	chr20:22560200-22561400	Genic enhancers	A549	lung
8	chr20:22560400-22560800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
9	chr20:22560400-22561000	Bivalent Enhancer	Fetal Lung	lung
10	chr20:22560400-22561000	Bivalent Enhancer	Stomach Mucosa	stomach
11	chr20:22560400-22561200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
12	chr20:22560400-22561200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr20:22560600-22560800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
14	chr20:22560600-22560800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
15	chr20:22560600-22560800	Active TSS	Pancreas	Pancrea
16	chr20:22560600-22561200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
17	chr20:22560600-22561200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
18	chr20:22560600-22561200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr20:22560600-22561200	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
20	chr20:22560600-22563400	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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