Variant report

Variant	rs1337919
Chromosome Location	chr20:22568595-22568596
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:22568506-22568664	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22563678..22565850-chr20:22566909..22570502,3	K562	blood:

Variant related genes	Relation type
FOXA2	TF binding region
ENSG00000125798	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1055080	1.00[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs1203884	0.81[TSI][hapmap]
rs1203905	1.00[JPT][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs1203907	1.00[JPT][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs1203910	0.87[EUR][1000 genomes]
rs1203915	0.93[EUR][1000 genomes]
rs1209523	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes]
rs1337918	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1337920	0.93[EUR][1000 genomes]
rs1337921	0.93[EUR][1000 genomes]
rs16984154	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1800847	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1974	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2003076	0.86[ASN][1000 genomes]
rs2277764	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4815127	0.86[TSI][hapmap]
rs6036152	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6036157	0.90[ASN][1000 genomes]
rs6036158	0.88[ASN][1000 genomes]
rs6048202	0.81[EUR][1000 genomes]
rs6048205	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.85[ASN][1000 genomes]
rs6048206	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6048209	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6048216	0.88[ASN][1000 genomes]
rs6113722	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72470563	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7266093	0.90[ASN][1000 genomes]
rs8123991	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs910959	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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