Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1055080	0.92[JPT][hapmap]
rs1203905	0.92[JPT][hapmap]
rs1203907	0.92[JPT][hapmap]
rs1203918	0.92[EUR][1000 genomes]
rs1203919	0.97[EUR][1000 genomes]
rs1209523	0.92[JPT][hapmap]
rs1337918	0.87[ASN][1000 genomes]
rs1337919	1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];0.92[JPT][hapmap];0.82[LWK][hapmap];0.91[MKK][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1800847	0.83[ASN][1000 genomes]
rs1974	0.81[ASN][1000 genomes]
rs2003076	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2277764	0.87[ASN][1000 genomes]
rs6036157	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6036158	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6048205	1.00[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap]
rs6048206	1.00[CHB][hapmap];0.85[CHD][hapmap];0.92[JPT][hapmap]
rs6048209	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs6048216	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7266093	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8123991	0.93[ASN][1000 genomes]
rs910958	0.97[EUR][1000 genomes]
rs910959	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22579000-22583600	Enhancers	Stomach Mucosa	stomach
2	chr20:22580800-22581400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr20:22580800-22581600	Enhancers	A549	lung

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