Variant report
| Variant | rs7266093 |
|---|---|
| Chromosome Location | chr20:22577636-22577637 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1055080 | 0.84[JPT][hapmap] |
| rs1203905 | 0.84[JPT][hapmap] |
| rs1203907 | 0.84[JPT][hapmap] |
| rs1203918 | 0.93[EUR][1000 genomes] |
| rs1203919 | 0.98[EUR][1000 genomes] |
| rs1203934 | 0.80[YRI][hapmap] |
| rs1209523 | 0.84[JPT][hapmap] |
| rs1337918 | 0.90[ASN][1000 genomes] |
| rs1337919 | 1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs16984154 | 0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1800847 | 0.86[ASN][1000 genomes] |
| rs1974 | 0.83[ASN][1000 genomes] |
| rs2003076 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2277764 | 0.90[ASN][1000 genomes] |
| rs6036157 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6036158 | 0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6048205 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs6048206 | 1.00[CHB][hapmap];0.84[JPT][hapmap] |
| rs6048209 | 1.00[CHB][hapmap];0.84[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6048216 | 0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs8123991 | 0.96[ASN][1000 genomes] |
| rs910958 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs910959 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428690 | chr20:22528757-22649625 | Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:22577600-22578400 | Weak transcription | Stomach Mucosa | stomach |
