Variant report

Variant	rs1203918
Chromosome Location	chr20:22579507-22579508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1055080	0.86[ASN][1000 genomes]
rs1203905	0.82[ASN][1000 genomes]
rs1203907	0.82[ASN][1000 genomes]
rs1203910	0.89[ASN][1000 genomes]
rs1203915	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1203919	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1209523	0.90[ASN][1000 genomes]
rs1337920	0.92[ASN][1000 genomes]
rs1337921	0.92[ASN][1000 genomes]
rs16984154	0.92[EUR][1000 genomes]
rs2003076	0.93[EUR][1000 genomes]
rs6036157	0.93[EUR][1000 genomes]
rs6036158	0.93[EUR][1000 genomes]
rs6048216	0.93[EUR][1000 genomes]
rs7266093	0.93[EUR][1000 genomes]
rs910958	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs910959	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22579000-22583600	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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