Variant report

Variant	rs6036152
Chromosome Location	chr20:22556593-22556594
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22554317..22556878-chr20:22561065..22563587,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1055080	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs11087387	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11087388	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1203895	0.86[EUR][1000 genomes]
rs1203896	0.81[EUR][1000 genomes]
rs1203898	0.92[EUR][1000 genomes]
rs1203899	0.87[EUR][1000 genomes]
rs1203905	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1203907	1.00[CEU][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1203910	0.84[EUR][1000 genomes]
rs1337918	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1337919	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1800847	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1974	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2277762	0.81[EUR][1000 genomes]
rs2277763	0.81[EUR][1000 genomes]
rs2277764	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4815127	0.81[EUR][1000 genomes]
rs6036145	0.86[EUR][1000 genomes]
rs6036146	0.81[EUR][1000 genomes]
rs6048183	0.81[EUR][1000 genomes]
rs6048184	0.90[EUR][1000 genomes]
rs6048191	0.81[EUR][1000 genomes]
rs6048192	0.81[EUR][1000 genomes]
rs6048196	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6048197	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6048199	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6048200	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6048202	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6048205	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6048206	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6048209	0.81[EUR][1000 genomes]
rs6113722	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72470563	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73300990	0.92[EUR][1000 genomes]
rs73300991	0.83[ASN][1000 genomes]
rs73300993	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8123991	0.83[EUR][1000 genomes]
rs945982	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22552000-22558200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
2	chr20:22552200-22557000	Enhancers	Stomach Mucosa	stomach
3	chr20:22554200-22556600	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr20:22555200-22557000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr20:22555200-22557400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
6	chr20:22555200-22557400	Flanking Active TSS	Liver	Liver
7	chr20:22555200-22557400	Enhancers	A549	lung
8	chr20:22555200-22558600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
9	chr20:22555200-22560400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
10	chr20:22555400-22556600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
11	chr20:22555400-22556800	Enhancers	Pancreas	Pancrea
12	chr20:22555400-22558800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr20:22555400-22559200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
14	chr20:22555600-22556600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
15	chr20:22555600-22557200	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr20:22555600-22558200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr20:22555600-22559200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr20:22555600-22559200	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr20:22555800-22557000	Bivalent Enhancer	Fetal Thymus	thymus
20	chr20:22555800-22557400	Bivalent Enhancer	Primary T cells from cord blood	blood
21	chr20:22555800-22557400	Flanking Active TSS	HepG2	liver
22	chr20:22556000-22556600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr20:22556000-22556600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr20:22556200-22557000	Bivalent Enhancer	NHEK	skin
25	chr20:22556200-22557200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
26	chr20:22556200-22557800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr20:22556400-22557400	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
28	chr20:22556400-22557400	ZNF genes & repeats	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links