Variant report

Variant	rs6048183
Chromosome Location	chr20:22537312-22537313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1055080	0.92[JPT][hapmap]
rs11087387	0.98[EUR][1000 genomes]
rs11087388	0.89[EUR][1000 genomes]
rs1203873	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1203875	0.95[EUR][1000 genomes]
rs1203876	0.95[EUR][1000 genomes]
rs1203877	0.95[EUR][1000 genomes]
rs1203879	1.00[CEU][hapmap];0.86[JPT][hapmap];0.95[EUR][1000 genomes]
rs1203880	1.00[CEU][hapmap];0.86[JPT][hapmap];0.95[EUR][1000 genomes]
rs1203881	1.00[CEU][hapmap];0.86[JPT][hapmap];0.95[EUR][1000 genomes]
rs1203883	0.95[EUR][1000 genomes]
rs1203884	1.00[CEU][hapmap];0.86[JPT][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes]
rs1203886	0.95[EUR][1000 genomes]
rs1203889	0.95[EUR][1000 genomes]
rs1203892	0.93[EUR][1000 genomes]
rs1203894	0.93[EUR][1000 genomes]
rs1203895	0.83[EUR][1000 genomes]
rs1203905	0.92[JPT][hapmap];0.87[TSI][hapmap]
rs1203907	0.92[JPT][hapmap];0.87[TSI][hapmap]
rs1209523	0.92[JPT][hapmap]
rs1337919	0.92[JPT][hapmap];0.86[TSI][hapmap]
rs2277762	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2277763	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2471	1.00[CEU][hapmap];0.86[JPT][hapmap];0.95[EUR][1000 genomes]
rs4815127	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.94[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5029909	0.82[EUR][1000 genomes]
rs6036145	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036146	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036152	0.81[EUR][1000 genomes]
rs6048184	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6048186	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6048191	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6048192	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6048196	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6048197	0.89[EUR][1000 genomes]
rs6048199	0.89[EUR][1000 genomes]
rs6048200	0.89[EUR][1000 genomes]
rs6048202	0.87[EUR][1000 genomes]
rs6048205	0.82[CEU][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs6048206	0.92[JPT][hapmap];0.93[TSI][hapmap]
rs6048209	0.92[JPT][hapmap];0.86[TSI][hapmap]
rs73300990	0.89[EUR][1000 genomes]
rs73300993	0.89[EUR][1000 genomes]
rs932560	0.93[EUR][1000 genomes]
rs945982	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22515000-22544200	Weak transcription	Pancreas	Pancrea
2	chr20:22536200-22544800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
3	chr20:22536600-22538000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr20:22536800-22537800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr20:22536800-22538200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr20:22536800-22539400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr20:22536800-22539600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
8	chr20:22536800-22545200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
9	chr20:22537000-22537600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr20:22537000-22537600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr20:22537000-22537800	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr20:22537200-22537400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
13	chr20:22537200-22537600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr20:22537200-22538000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
15	chr20:22537200-22538400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
16	chr20:22537200-22542400	Weak transcription	K562	blood

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