Variant report

Variant	rs5029909
Chromosome Location	chr20:22524081-22524082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11087387	0.80[EUR][1000 genomes]
rs1203867	0.89[EUR][1000 genomes]
rs1203868	0.82[EUR][1000 genomes]
rs1203873	0.81[EUR][1000 genomes]
rs1203875	0.81[EUR][1000 genomes]
rs1203876	0.81[EUR][1000 genomes]
rs1203877	0.81[EUR][1000 genomes]
rs1203879	0.81[EUR][1000 genomes]
rs1203880	0.81[EUR][1000 genomes]
rs1203881	0.81[EUR][1000 genomes]
rs1203883	0.81[EUR][1000 genomes]
rs1203884	0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs1203886	0.81[EUR][1000 genomes]
rs1203889	0.81[EUR][1000 genomes]
rs1203905	0.87[TSI][hapmap]
rs1203907	0.87[TSI][hapmap]
rs1337919	0.86[TSI][hapmap]
rs2021680	0.86[EUR][1000 genomes]
rs2021681	0.84[EUR][1000 genomes]
rs2277762	0.82[EUR][1000 genomes]
rs2277763	0.82[EUR][1000 genomes]
rs2471	0.81[EUR][1000 genomes]
rs4519600	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4815126	0.80[EUR][1000 genomes]
rs4815127	1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs59061776	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6036143	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036144	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6036146	0.82[EUR][1000 genomes]
rs6048179	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048180	0.98[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6048183	0.82[EUR][1000 genomes]
rs6048186	0.82[EUR][1000 genomes]
rs6048191	0.82[EUR][1000 genomes]
rs6048192	0.82[EUR][1000 genomes]
rs6048196	0.82[EUR][1000 genomes]
rs6048205	1.00[TSI][hapmap]
rs6048206	0.93[TSI][hapmap]
rs6048209	0.86[TSI][hapmap]
rs6082743	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61520093	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73902879	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs5029909	TPBG	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22515000-22544200	Weak transcription	Pancreas	Pancrea
2	chr20:22519000-22524200	Weak transcription	HepG2	liver
3	chr20:22521800-22528800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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