Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1203867	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1203868	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1209523	1.00[CEU][hapmap]
rs12481297	0.80[AMR][1000 genomes]
rs13040491	0.81[EUR][1000 genomes]
rs1337919	1.00[CEU][hapmap]
rs2021680	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2021681	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4519600	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4815126	0.88[EUR][1000 genomes]
rs5029909	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59061776	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6036143	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6036145	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6048179	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6048180	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6048184	0.81[EUR][1000 genomes]
rs6048209	1.00[CEU][hapmap]
rs6082743	0.98[EUR][1000 genomes]
rs61520093	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73902879	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs945982	0.83[EUR][1000 genomes]
rs952690	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22515000-22544200	Weak transcription	Pancreas	Pancrea
2	chr20:22529000-22536800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:22530400-22536800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr20:22530800-22531800	Enhancers	K562	blood
5	chr20:22531600-22532000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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