Variant report

Variant	rs13040491
Chromosome Location	chr20:22519364-22519365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1055080	0.93[TSI][hapmap]
rs1203867	0.83[EUR][1000 genomes]
rs1203884	0.81[TSI][hapmap]
rs1203905	0.86[TSI][hapmap]
rs1203907	0.86[TSI][hapmap]
rs1209523	1.00[CEU][hapmap];0.93[TSI][hapmap]
rs12481297	0.86[EUR][1000 genomes]
rs1337919	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2152936	0.87[AFR][1000 genomes]
rs2404167	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4519600	0.83[EUR][1000 genomes]
rs4813459	0.88[AFR][1000 genomes]
rs4815116	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4815117	0.84[AMR][1000 genomes]
rs4815126	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4815127	0.86[TSI][hapmap]
rs59061776	0.90[EUR][1000 genomes]
rs6036140	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6036141	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6036142	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6036143	0.83[EUR][1000 genomes]
rs6036144	0.81[EUR][1000 genomes]
rs6048171	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6048172	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6048179	0.81[EUR][1000 genomes]
rs6048180	0.81[EUR][1000 genomes]
rs6048205	0.86[TSI][hapmap]
rs6048206	0.93[TSI][hapmap]
rs6048209	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs6075924	0.87[AMR][1000 genomes]
rs6082733	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6082734	0.84[AMR][1000 genomes]
rs6082735	0.87[AMR][1000 genomes]
rs6082743	0.83[EUR][1000 genomes]
rs6106520	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61520093	0.92[EUR][1000 genomes]
rs73902875	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73902879	0.92[EUR][1000 genomes]
rs945981	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs945982	0.82[AMR][1000 genomes]
rs952690	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13040491	LIN28B	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22510600-22521600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:22515000-22544200	Weak transcription	Pancreas	Pancrea
3	chr20:22519000-22524200	Weak transcription	HepG2	liver

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