Variant report

Variant	rs6106520
Chromosome Location	chr20:22515527-22515528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11905577	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1203882	1.00[JPT][hapmap]
rs1203904	1.00[JPT][hapmap]
rs12481297	0.98[EUR][1000 genomes]
rs13040491	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2152936	0.92[AFR][1000 genomes]
rs2404167	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4813459	0.94[AFR][1000 genomes]
rs4815116	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4815117	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4815126	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6036137	0.84[EUR][1000 genomes]
rs6036138	0.84[EUR][1000 genomes]
rs6036140	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6036141	1.00[EUR][1000 genomes]
rs6036142	1.00[EUR][1000 genomes]
rs6048153	0.84[EUR][1000 genomes]
rs6048155	0.82[EUR][1000 genomes]
rs6048160	0.86[EUR][1000 genomes]
rs6048162	0.86[EUR][1000 genomes]
rs6048163	0.86[EUR][1000 genomes]
rs6048166	0.88[EUR][1000 genomes]
rs6048167	0.88[EUR][1000 genomes]
rs6048168	0.88[EUR][1000 genomes]
rs6048169	0.90[EUR][1000 genomes]
rs6048171	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6048172	1.00[EUR][1000 genomes]
rs6075923	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6075924	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6082727	0.86[ASN][1000 genomes]
rs6082733	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6082734	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6082735	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61520093	0.81[EUR][1000 genomes]
rs73902850	0.86[EUR][1000 genomes]
rs73902875	0.94[EUR][1000 genomes]
rs73902879	0.81[EUR][1000 genomes]
rs8117447	0.86[EUR][1000 genomes]
rs945981	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs952690	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22506800-22519000	Enhancers	HepG2	liver
2	chr20:22510600-22521600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:22513000-22517000	Weak transcription	A549	lung
4	chr20:22514800-22517400	Weak transcription	Fetal Intestine Large	intestine
5	chr20:22515000-22517600	Weak transcription	Stomach Mucosa	stomach
6	chr20:22515000-22544200	Weak transcription	Pancreas	Pancrea
7	chr20:22515200-22515600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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