Variant report

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:22542551-22545334	HepG2	liver:	n/a	n/a
2	POLR2A	chr20:22542648-22543552	HepG2	liver:	n/a	n/a
3	POLR2A	chr20:22539124-22546431	HepG2	liver:	n/a	n/a
4	POLR2A	chr20:22539677-22547334	HepG2	liver:	n/a	n/a
5	FOSL2	chr20:22542321-22543599	HepG2	liver:	n/a	n/a
6	MBD4	chr20:22543455-22545081	HepG2	liver:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FOXA2-2	chr20:22541191-22545754	ENSG00000225074
2	lnc-FOXA2-2	chr20:22541191-22543929	XLOC_013684
3	lnc-FOXA2-2	chr20:22541194-22545754	XLOC_013684
4	lnc-FOXA2-2	chr20:22540989-22545754	NONHSAT078989
5	lnc-FOXA2-2	chr20:22542193-22543929	NONHSAT078993
6	lnc-FOXA2-2	chr20:22541216-22545754	NONHSAT078994
7	lnc-FOXA2-2	chr20:22541192-22545754	NR_001558

No data

Variant related genes	Relation type
LINC00261	TF binding region

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1203869	0.93[ASN][1000 genomes]
rs1203870	1.00[ASN][1000 genomes]
rs1203878	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203885	0.87[ASN][1000 genomes]
rs1203887	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1203888	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1203890	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1203891	0.87[ASN][1000 genomes]
rs1203893	0.87[ASN][1000 genomes]
rs1203897	1.00[ASN][1000 genomes]
rs1203900	1.00[ASN][1000 genomes]
rs1203901	1.00[ASN][1000 genomes]
rs1203903	1.00[ASN][1000 genomes]
rs1203904	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1203906	1.00[ASN][1000 genomes]
rs1203908	1.00[ASN][1000 genomes]
rs1415818	0.86[ASN][1000 genomes]
rs1538219	0.86[ASN][1000 genomes]
rs1572580	0.80[ASN][1000 genomes]
rs1890207	0.80[ASN][1000 genomes]
rs1890208	0.80[ASN][1000 genomes]
rs1999862	0.80[ASN][1000 genomes]
rs4813461	0.86[ASN][1000 genomes]
rs4815118	0.80[ASN][1000 genomes]
rs4815120	0.80[ASN][1000 genomes]
rs6036139	0.80[ASN][1000 genomes]
rs6048161	0.80[ASN][1000 genomes]
rs6048170	0.80[ASN][1000 genomes]
rs6048174	0.86[ASN][1000 genomes]
rs6048175	0.86[ASN][1000 genomes]
rs6048176	0.86[ASN][1000 genomes]
rs6048181	0.86[ASN][1000 genomes]
rs6082736	0.80[ASN][1000 genomes]
rs6082739	0.80[ASN][1000 genomes]
rs6082740	0.86[ASN][1000 genomes]
rs6082741	0.86[ASN][1000 genomes]
rs6113696	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv10848	chr20:22542235-22543685	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh	TF binding region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22515000-22544200	Weak transcription	Pancreas	Pancrea
2	chr20:22536200-22544800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
3	chr20:22536800-22545200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
4	chr20:22537600-22543800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
5	chr20:22539400-22545200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
6	chr20:22540000-22548800	Weak transcription	Gastric	stomach
7	chr20:22541200-22545000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
8	chr20:22541400-22544200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
9	chr20:22541400-22545200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr20:22542400-22544200	Enhancers	HepG2	liver
11	chr20:22542800-22543800	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
12	chr20:22542800-22544400	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr20:22542800-22544600	Enhancers	Liver	Liver
14	chr20:22542800-22544800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
15	chr20:22542800-22545000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
16	chr20:22543000-22543800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr20:22543200-22544400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
18	chr20:22543200-22548000	Weak transcription	K562	blood
19	chr20:22543400-22543800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
20	chr20:22543400-22545200	Enhancers	Stomach Mucosa	stomach

Quick Search: