Variant report
| Variant | rs6082740 |
|---|---|
| Chromosome Location | chr20:22521216-22521217 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:43)
| rs_ID | r2[population] |
|---|---|
| rs1203869 | 0.93[ASN][1000 genomes] |
| rs1203870 | 0.86[ASN][1000 genomes] |
| rs1203878 | 0.86[ASN][1000 genomes] |
| rs1203882 | 0.86[ASN][1000 genomes] |
| rs1203887 | 1.00[CHD][hapmap] |
| rs1203888 | 1.00[CHD][hapmap] |
| rs1203897 | 0.86[ASN][1000 genomes] |
| rs1203900 | 0.86[ASN][1000 genomes] |
| rs1203901 | 0.86[ASN][1000 genomes] |
| rs1203903 | 0.86[ASN][1000 genomes] |
| rs1203904 | 0.86[ASN][1000 genomes] |
| rs1203906 | 0.86[ASN][1000 genomes] |
| rs1203908 | 0.86[ASN][1000 genomes] |
| rs1415818 | 1.00[ASN][1000 genomes] |
| rs1538218 | 0.80[ASN][1000 genomes] |
| rs1538219 | 1.00[ASN][1000 genomes] |
| rs1572580 | 0.93[ASN][1000 genomes] |
| rs1890207 | 0.93[ASN][1000 genomes] |
| rs1890208 | 0.93[ASN][1000 genomes] |
| rs1999862 | 0.93[ASN][1000 genomes] |
| rs2152935 | 0.80[ASN][1000 genomes] |
| rs2404166 | 0.80[ASN][1000 genomes] |
| rs2896772 | 0.80[ASN][1000 genomes] |
| rs4813458 | 0.80[ASN][1000 genomes] |
| rs4813461 | 1.00[ASN][1000 genomes] |
| rs4815118 | 0.93[ASN][1000 genomes] |
| rs4815120 | 0.93[ASN][1000 genomes] |
| rs6036136 | 0.80[ASN][1000 genomes] |
| rs6036139 | 0.93[ASN][1000 genomes] |
| rs6048150 | 0.80[ASN][1000 genomes] |
| rs6048151 | 0.80[ASN][1000 genomes] |
| rs6048152 | 0.80[ASN][1000 genomes] |
| rs6048161 | 0.93[ASN][1000 genomes] |
| rs6048170 | 0.93[ASN][1000 genomes] |
| rs6048174 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6048175 | 1.00[ASN][1000 genomes] |
| rs6048176 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6048181 | 1.00[ASN][1000 genomes] |
| rs6082732 | 0.80[ASN][1000 genomes] |
| rs6082736 | 0.93[ASN][1000 genomes] |
| rs6082739 | 0.93[ASN][1000 genomes] |
| rs6082741 | 1.00[ASN][1000 genomes] |
| rs6113696 | 0.93[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:22510600-22521600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr20:22515000-22544200 | Weak transcription | Pancreas | Pancrea |
| 3 | chr20:22519000-22524200 | Weak transcription | HepG2 | liver |
