Variant report

Variant	rs1203903
Chromosome Location	chr20:22560429-22560430
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:29)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:29 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCL3	chr20:22560219-22561430	A549	lung:	n/a	n/a
2	HEY1	chr20:22560360-22561608	HepG2	liver:	n/a	n/a
3	MBD4	chr20:22560319-22561987	HepG2	liver:	n/a	n/a
4	CTBP2	chr20:22557228-22560647	H1-hESC	embryonic stem cell:	n/a	n/a
5	CHD2	chr20:22560364-22560663	HepG2	liver:	n/a	n/a
6	POLR2A	chr20:22560362-22560597	A549	lung:	n/a	n/a
7	POLR2A	chr20:22560241-22562821	HepG2	liver:	n/a	n/a
8	TCF12	chr20:22560221-22561355	A549	lung:	n/a	n/a
9	POLR2A	chr20:22559127-22561986	HepG2	liver:	n/a	n/a
10	ELF1	chr20:22560389-22561188	A549	lung:	n/a	n/a
11	POLR2A	chr20:22560339-22562149	HepG2	liver:	n/a	n/a
12	POLR2A	chr20:22560316-22561511	HepG2	liver:	n/a	n/a
13	POLR2A	chr20:22560347-22560840	A549	lung:	n/a	n/a
14	SUZ12	chr20:22560362-22561226	H1-hESC	embryonic stem cell:	n/a	n/a
15	POLR2A	chr20:22560419-22560603	HepG2	liver:	n/a	n/a
16	CEBPD	chr20:22560336-22560660	HepG2	liver:	n/a	n/a
17	JUND	chr20:22560325-22560926	A549	lung:	n/a	n/a
18	POLR2A	chr20:22560376-22560619	A549	lung:	n/a	n/a
19	SUZ12	chr20:22556202-22561602	NT2-D1	testis:	n/a	n/a
20	POLR2A	chr20:22559892-22561492	PANC-1	pancreas:	n/a	n/a
21	MBD4	chr20:22560307-22561593	HepG2	liver:	n/a	n/a
22	FOSL2	chr20:22560273-22561389	HepG2	liver:	n/a	n/a
23	POLR2A	chr20:22560334-22560850	A549	lung:	n/a	n/a
24	BCL3	chr20:22560096-22561603	A549	lung:	n/a	chr20:22560208-22560221
25	POLR2A	chr20:22560333-22561993	HepG2	liver:	n/a	n/a
26	POLR2A	chr20:22558301-22561412	PANC-1	pancreas:	n/a	n/a
27	JUND	chr20:22560271-22561257	A549	lung:	n/a	n/a
28	POLR2A	chr20:22560284-22561692	HepG2	liver:	n/a	n/a
29	POLR2A	chr20:22560380-22560899	H1-neurons	neurons:	n/a	n/a

No data

Variant related genes	Relation type
LINC00261	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1203869	0.93[ASN][1000 genomes]
rs1203870	1.00[ASN][1000 genomes]
rs1203878	1.00[ASN][1000 genomes]
rs1203882	1.00[ASN][1000 genomes]
rs1203885	0.87[ASN][1000 genomes]
rs1203887	0.87[ASN][1000 genomes]
rs1203888	0.87[ASN][1000 genomes]
rs1203890	0.87[ASN][1000 genomes]
rs1203891	0.87[ASN][1000 genomes]
rs1203893	0.87[ASN][1000 genomes]
rs1203897	1.00[ASN][1000 genomes]
rs1203900	1.00[ASN][1000 genomes]
rs1203901	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203906	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203908	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415818	0.86[ASN][1000 genomes]
rs1538219	0.86[ASN][1000 genomes]
rs1572580	0.80[ASN][1000 genomes]
rs1890207	0.80[ASN][1000 genomes]
rs1890208	0.80[ASN][1000 genomes]
rs1999862	0.80[ASN][1000 genomes]
rs4813461	0.86[ASN][1000 genomes]
rs4815118	0.80[ASN][1000 genomes]
rs4815120	0.80[ASN][1000 genomes]
rs6036139	0.80[ASN][1000 genomes]
rs6048161	0.80[ASN][1000 genomes]
rs6048170	0.80[ASN][1000 genomes]
rs6048174	0.86[ASN][1000 genomes]
rs6048175	0.86[ASN][1000 genomes]
rs6048176	0.86[ASN][1000 genomes]
rs6048181	0.86[ASN][1000 genomes]
rs6082736	0.80[ASN][1000 genomes]
rs6082739	0.80[ASN][1000 genomes]
rs6082740	0.86[ASN][1000 genomes]
rs6082741	0.86[ASN][1000 genomes]
rs6113696	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22556800-22560800	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr20:22559200-22560600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr20:22559200-22562200	Weak transcription	Gastric	stomach
4	chr20:22559800-22560800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
5	chr20:22560000-22560600	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
6	chr20:22560000-22560800	Enhancers	Liver	Liver
7	chr20:22560000-22560800	Enhancers	HepG2	liver
8	chr20:22560000-22561200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
9	chr20:22560200-22560600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr20:22560200-22561400	Genic enhancers	A549	lung
11	chr20:22560400-22560600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
12	chr20:22560400-22560600	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
13	chr20:22560400-22560600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
14	chr20:22560400-22560600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
15	chr20:22560400-22560600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr20:22560400-22560600	Flanking Active TSS	Pancreas	Pancrea
17	chr20:22560400-22560800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
18	chr20:22560400-22561000	Bivalent Enhancer	Fetal Lung	lung
19	chr20:22560400-22561000	Bivalent Enhancer	Stomach Mucosa	stomach
20	chr20:22560400-22561200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
21	chr20:22560400-22561200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell

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