Variant report

Variant	rs6082736
Chromosome Location	chr20:22508742-22508743
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22504029..22508183-chr20:22508340..22510510,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1203869	0.87[ASN][1000 genomes]
rs1203870	0.80[ASN][1000 genomes]
rs1203878	0.80[ASN][1000 genomes]
rs1203882	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1203887	1.00[YRI][hapmap]
rs1203897	0.80[ASN][1000 genomes]
rs1203900	0.80[ASN][1000 genomes]
rs1203901	0.80[ASN][1000 genomes]
rs1203903	0.80[ASN][1000 genomes]
rs1203904	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1203906	0.80[ASN][1000 genomes]
rs1203908	0.80[ASN][1000 genomes]
rs1415817	1.00[AMR][1000 genomes]
rs1415818	0.93[ASN][1000 genomes]
rs1538218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1538219	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1572580	1.00[ASN][1000 genomes]
rs1890207	1.00[ASN][1000 genomes]
rs1890208	1.00[ASN][1000 genomes]
rs1999862	1.00[ASN][1000 genomes]
rs2152935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2404166	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2896772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4813458	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4813461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4815118	1.00[ASN][1000 genomes]
rs4815120	1.00[ASN][1000 genomes]
rs6036133	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6036136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6036139	1.00[ASN][1000 genomes]
rs6048150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6048151	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6048152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6048161	1.00[ASN][1000 genomes]
rs6048170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6048174	0.93[ASN][1000 genomes]
rs6048175	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6048176	0.93[ASN][1000 genomes]
rs6048181	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6082724	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6082732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6082739	1.00[ASN][1000 genomes]
rs6082740	0.93[ASN][1000 genomes]
rs6082741	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6113696	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066578	chr20:22472671-22513844	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22505400-22510400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:22505600-22509800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr20:22505600-22512200	Weak transcription	A549	lung
4	chr20:22506000-22514200	Weak transcription	Stomach Mucosa	stomach
5	chr20:22506600-22508800	Enhancers	Liver	Liver
6	chr20:22506800-22510000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr20:22506800-22510000	Weak transcription	Pancreas	Pancrea
8	chr20:22506800-22519000	Enhancers	HepG2	liver

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