Variant report

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:22542551-22545334	HepG2	liver:	n/a	n/a
2	POLR2A	chr20:22544708-22545141	HepG2	liver:	n/a	n/a
3	POLR2A	chr20:22539124-22546431	HepG2	liver:	n/a	n/a
4	POLR2A	chr20:22543786-22545151	HepG2	liver:	n/a	n/a
5	POLR2A	chr20:22539677-22547334	HepG2	liver:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FOXA2-2	chr20:22541191-22545754	ENSG00000225074
2	lnc-FOXA2-2	chr20:22544533-22545754	XLOC_013684
3	lnc-FOXA2-2	chr20:22544288-22545754	XLOC_013684
4	lnc-FOXA2-2	chr20:22541194-22545754	XLOC_013684
5	lnc-FOXA2-2	chr20:22544754-22545754	NONHSAT078988
6	lnc-FOXA2-2	chr20:22540989-22545754	NONHSAT078989
7	lnc-FOXA2-2	chr20:22544754-22545754	NONHSAT078990
8	lnc-FOXA2-2	chr20:22544533-22545754	NONHSAT078993
9	lnc-FOXA2-2	chr20:22541216-22545754	NONHSAT078994
10	lnc-FOXA2-2	chr20:22541192-22545754	NR_001558

No data

Variant related genes	Relation type
LINC00261	TF binding region

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1203869	0.81[ASN][1000 genomes]
rs1203870	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1203878	0.87[ASN][1000 genomes]
rs1203882	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1203885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203888	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203890	1.00[ASN][1000 genomes]
rs1203891	1.00[ASN][1000 genomes]
rs1203893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203897	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1203900	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1203901	0.87[ASN][1000 genomes]
rs1203903	0.87[ASN][1000 genomes]
rs1203904	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1203906	0.87[ASN][1000 genomes]
rs1203908	0.87[ASN][1000 genomes]
rs1203911	1.00[EUR][1000 genomes]
rs1203912	1.00[EUR][1000 genomes]
rs1203913	1.00[EUR][1000 genomes]
rs1203914	1.00[EUR][1000 genomes]
rs6036199	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22536800-22545200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
2	chr20:22539400-22545200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
3	chr20:22540000-22548800	Weak transcription	Gastric	stomach
4	chr20:22541400-22545200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr20:22543200-22548000	Weak transcription	K562	blood
6	chr20:22543400-22545200	Enhancers	Stomach Mucosa	stomach
7	chr20:22543600-22547800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr20:22544000-22545200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr20:22544200-22547000	Genic enhancers	HepG2	liver
10	chr20:22544400-22546400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr20:22544400-22548000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr20:22544600-22549400	Genic enhancers	Liver	Liver
13	chr20:22544800-22545200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
14	chr20:22545000-22545600	Strong transcription	Pancreas	Pancrea

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