Variant report

Variant	rs1203913
Chromosome Location	chr20:22571105-22571106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1203870	1.00[EUR][1000 genomes]
rs1203885	1.00[EUR][1000 genomes]
rs1203887	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1203888	1.00[EUR][1000 genomes]
rs1203893	1.00[EUR][1000 genomes]
rs1203897	1.00[EUR][1000 genomes]
rs1203900	1.00[EUR][1000 genomes]
rs1203911	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203912	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203914	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036199	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22569600-22571200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
2	chr20:22570000-22571200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
3	chr20:22570400-22571200	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
4	chr20:22570400-22571200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
5	chr20:22570400-22571600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
6	chr20:22570400-22572400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
7	chr20:22570600-22572600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
8	chr20:22570800-22572600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
9	chr20:22571000-22572600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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