Variant report

Variant	rs1203914
Chromosome Location	chr20:22571711-22571712
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1203870	1.00[EUR][1000 genomes]
rs1203882	1.00[JPT][hapmap]
rs1203885	1.00[EUR][1000 genomes]
rs1203887	1.00[EUR][1000 genomes]
rs1203888	1.00[EUR][1000 genomes]
rs1203893	1.00[EUR][1000 genomes]
rs1203897	1.00[EUR][1000 genomes]
rs1203900	1.00[EUR][1000 genomes]
rs1203904	1.00[JPT][hapmap]
rs1203906	0.81[AFR][1000 genomes]
rs1203911	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203912	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203913	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22570400-22572400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
2	chr20:22570600-22572600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
3	chr20:22570800-22572600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
4	chr20:22571000-22572600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr20:22571200-22571800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr20:22571200-22572000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr20:22571200-22572200	Enhancers	H9 Cell Line	embryonic stem cell
8	chr20:22571400-22571800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr20:22571400-22572000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr20:22571600-22571800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr20:22571600-22571800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
12	chr20:22571600-22571800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
13	chr20:22571600-22571800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
14	chr20:22571600-22572600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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