Variant report

Variant	rs1203900
Chromosome Location	chr20:22553946-22553947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1203869	0.93[ASN][1000 genomes]
rs1203870	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203878	1.00[ASN][1000 genomes]
rs1203882	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1203885	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1203887	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1203888	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1203890	0.87[ASN][1000 genomes]
rs1203891	0.87[ASN][1000 genomes]
rs1203893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1203897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203901	1.00[ASN][1000 genomes]
rs1203903	1.00[ASN][1000 genomes]
rs1203904	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1203906	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1203908	1.00[ASN][1000 genomes]
rs1203911	1.00[EUR][1000 genomes]
rs1203912	1.00[EUR][1000 genomes]
rs1203913	1.00[EUR][1000 genomes]
rs1203914	1.00[EUR][1000 genomes]
rs1415818	0.86[ASN][1000 genomes]
rs1538219	0.86[ASN][1000 genomes]
rs1572580	0.80[ASN][1000 genomes]
rs1890207	0.80[ASN][1000 genomes]
rs1890208	0.80[ASN][1000 genomes]
rs1999862	0.80[ASN][1000 genomes]
rs4813461	0.86[ASN][1000 genomes]
rs4815118	0.80[ASN][1000 genomes]
rs4815120	0.80[ASN][1000 genomes]
rs6036139	0.80[ASN][1000 genomes]
rs6048161	0.80[ASN][1000 genomes]
rs6048170	0.80[ASN][1000 genomes]
rs6048174	0.86[ASN][1000 genomes]
rs6048175	0.86[ASN][1000 genomes]
rs6048176	0.86[ASN][1000 genomes]
rs6048181	0.86[ASN][1000 genomes]
rs6082736	0.80[ASN][1000 genomes]
rs6082739	0.80[ASN][1000 genomes]
rs6082740	0.86[ASN][1000 genomes]
rs6082741	0.86[ASN][1000 genomes]
rs6113696	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22549400-22555200	Enhancers	Liver	Liver
2	chr20:22550800-22555600	Genic enhancers	HepG2	liver
3	chr20:22551600-22554200	Enhancers	Pancreas	Pancrea
4	chr20:22552000-22555000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr20:22552000-22558200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
6	chr20:22552200-22557000	Enhancers	Stomach Mucosa	stomach
7	chr20:22552600-22555200	Weak transcription	A549	lung
8	chr20:22553000-22554200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr20:22553400-22554400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
10	chr20:22553800-22555600	Weak transcription	Gastric	stomach

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