Variant report

(count:17 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYBL2	chr20:22560678-22561625	HepG2	liver:	n/a	n/a
2	BCL3	chr20:22560219-22561430	A549	lung:	n/a	n/a
3	HEY1	chr20:22560360-22561608	HepG2	liver:	n/a	n/a
4	MBD4	chr20:22560319-22561987	HepG2	liver:	n/a	n/a
5	POLR2A	chr20:22560241-22562821	HepG2	liver:	n/a	n/a
6	POLR2A	chr20:22559127-22561986	HepG2	liver:	n/a	n/a
7	POLR2A	chr20:22560339-22562149	HepG2	liver:	n/a	n/a
8	POLR2A	chr20:22560316-22561511	HepG2	liver:	n/a	n/a
9	SUZ12	chr20:22556202-22561602	NT2-D1	testis:	n/a	n/a
10	POLR2A	chr20:22559892-22561492	PANC-1	pancreas:	n/a	n/a
11	MBD4	chr20:22560307-22561593	HepG2	liver:	n/a	n/a
12	BCL3	chr20:22560096-22561603	A549	lung:	n/a	chr20:22560208-22560221
13	POLR2A	chr20:22560333-22561993	HepG2	liver:	n/a	n/a
14	POLR2A	chr20:22558301-22561412	PANC-1	pancreas:	n/a	n/a
15	NFIC	chr20:22560555-22561411	HepG2	liver:	n/a	n/a
16	POLR2A	chr20:22560456-22562225	K562	blood:	n/a	n/a
17	POLR2A	chr20:22560284-22561692	HepG2	liver:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22560956..22563425-chr7:98474991..98476982,2	MCF-7	breast:
2	chr20:22554317..22556878-chr20:22561065..22563587,2	MCF-7	breast:

No data

Variant related genes	Relation type
LINC00261	TF binding region
ENSG00000196367	Chromatin interaction

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1203869	0.93[ASN][1000 genomes]
rs1203870	1.00[ASN][1000 genomes]
rs1203878	1.00[ASN][1000 genomes]
rs1203882	1.00[ASN][1000 genomes]
rs1203885	0.87[ASN][1000 genomes]
rs1203887	0.87[ASN][1000 genomes]
rs1203888	0.87[ASN][1000 genomes]
rs1203890	0.87[ASN][1000 genomes]
rs1203891	0.87[ASN][1000 genomes]
rs1203893	0.87[ASN][1000 genomes]
rs1203897	1.00[ASN][1000 genomes]
rs1203900	1.00[ASN][1000 genomes]
rs1203901	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203903	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203904	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203906	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415818	0.86[ASN][1000 genomes]
rs1538219	0.86[ASN][1000 genomes]
rs1572580	0.80[ASN][1000 genomes]
rs1890207	0.80[ASN][1000 genomes]
rs1890208	0.80[ASN][1000 genomes]
rs1999862	0.80[ASN][1000 genomes]
rs4813461	0.86[ASN][1000 genomes]
rs4815118	0.80[ASN][1000 genomes]
rs4815120	0.80[ASN][1000 genomes]
rs6036139	0.80[ASN][1000 genomes]
rs6048161	0.80[ASN][1000 genomes]
rs6048170	0.80[ASN][1000 genomes]
rs6048174	0.86[ASN][1000 genomes]
rs6048175	0.86[ASN][1000 genomes]
rs6048176	0.86[ASN][1000 genomes]
rs6048181	0.86[ASN][1000 genomes]
rs6082736	0.80[ASN][1000 genomes]
rs6082739	0.80[ASN][1000 genomes]
rs6082740	0.86[ASN][1000 genomes]
rs6082741	0.86[ASN][1000 genomes]
rs6113696	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22559200-22562200	Weak transcription	Gastric	stomach
2	chr20:22560200-22561400	Genic enhancers	A549	lung
3	chr20:22560600-22563400	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr20:22560800-22561400	Flanking Active TSS	Liver	Liver
5	chr20:22560800-22561600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr20:22560800-22562200	Genic enhancers	HepG2	liver
7	chr20:22561000-22561600	Enhancers	Stomach Mucosa	stomach
8	chr20:22561200-22561400	Enhancers	Pancreas	Pancrea
9	chr20:22561200-22561600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
10	chr20:22561200-22567800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

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