Variant report

Variant	rs6082739
Chromosome Location	chr20:22513354-22513355
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1203869	0.87[ASN][1000 genomes]
rs1203870	0.80[ASN][1000 genomes]
rs1203878	0.80[ASN][1000 genomes]
rs1203882	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1203897	0.80[ASN][1000 genomes]
rs1203900	0.80[ASN][1000 genomes]
rs1203901	0.80[ASN][1000 genomes]
rs1203903	0.80[ASN][1000 genomes]
rs1203904	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1203906	0.80[ASN][1000 genomes]
rs1203908	0.80[ASN][1000 genomes]
rs1415818	0.93[ASN][1000 genomes]
rs1538218	0.87[ASN][1000 genomes]
rs1538219	0.93[ASN][1000 genomes]
rs1572580	1.00[ASN][1000 genomes]
rs1572581	0.90[AFR][1000 genomes]
rs1890207	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890208	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1933206	1.00[EUR][1000 genomes]
rs1999862	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2152935	0.87[ASN][1000 genomes]
rs2404166	0.87[ASN][1000 genomes]
rs2896772	0.87[ASN][1000 genomes]
rs4813458	0.87[ASN][1000 genomes]
rs4813461	0.93[ASN][1000 genomes]
rs4815118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4815120	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55670535	1.00[EUR][1000 genomes]
rs57463742	1.00[EUR][1000 genomes]
rs59287498	1.00[EUR][1000 genomes]
rs6036136	0.87[ASN][1000 genomes]
rs6036139	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60431508	1.00[EUR][1000 genomes]
rs6048150	0.87[ASN][1000 genomes]
rs6048151	0.87[ASN][1000 genomes]
rs6048152	0.87[ASN][1000 genomes]
rs6048161	1.00[ASN][1000 genomes]
rs6048170	1.00[ASN][1000 genomes]
rs6048174	0.93[ASN][1000 genomes]
rs6048175	0.93[ASN][1000 genomes]
rs6048176	0.93[ASN][1000 genomes]
rs6048181	0.93[ASN][1000 genomes]
rs6082732	0.87[ASN][1000 genomes]
rs6082736	1.00[ASN][1000 genomes]
rs6082740	0.93[ASN][1000 genomes]
rs6082741	0.93[ASN][1000 genomes]
rs6113696	1.00[ASN][1000 genomes]
rs61293114	1.00[EUR][1000 genomes]
rs73900525	1.00[EUR][1000 genomes]
rs73902867	1.00[EUR][1000 genomes]
rs73902871	1.00[EUR][1000 genomes]
rs73902877	1.00[EUR][1000 genomes]
rs73902881	1.00[EUR][1000 genomes]
rs73902884	1.00[EUR][1000 genomes]
rs73902886	1.00[EUR][1000 genomes]
rs73904109	1.00[EUR][1000 genomes]
rs73904111	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066578	chr20:22472671-22513844	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22506000-22514200	Weak transcription	Stomach Mucosa	stomach
2	chr20:22506800-22519000	Enhancers	HepG2	liver
3	chr20:22510600-22514600	Weak transcription	Pancreas	Pancrea
4	chr20:22510600-22521600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr20:22511000-22513600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr20:22513000-22517000	Weak transcription	A549	lung

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