Variant report

Variant	rs60431508
Chromosome Location	chr20:22532776-22532777
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1890207	1.00[EUR][1000 genomes]
rs1890208	1.00[EUR][1000 genomes]
rs1933206	1.00[EUR][1000 genomes]
rs1999862	1.00[EUR][1000 genomes]
rs4815118	1.00[EUR][1000 genomes]
rs4815120	1.00[EUR][1000 genomes]
rs55670535	1.00[EUR][1000 genomes]
rs57463742	1.00[EUR][1000 genomes]
rs57995632	1.00[EUR][1000 genomes]
rs59287498	1.00[EUR][1000 genomes]
rs6036139	1.00[EUR][1000 genomes]
rs6082739	1.00[EUR][1000 genomes]
rs6113785	1.00[EUR][1000 genomes]
rs61293114	1.00[EUR][1000 genomes]
rs73900525	1.00[EUR][1000 genomes]
rs73902867	1.00[EUR][1000 genomes]
rs73902871	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73902877	1.00[EUR][1000 genomes]
rs73902881	1.00[EUR][1000 genomes]
rs73902884	1.00[EUR][1000 genomes]
rs73902886	1.00[EUR][1000 genomes]
rs73904109	1.00[EUR][1000 genomes]
rs73904111	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22515000-22544200	Weak transcription	Pancreas	Pancrea
2	chr20:22529000-22536800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:22530400-22536800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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