Variant report

Variant	rs6113785
Chromosome Location	chr20:22699960-22699961
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1319395	1.00[EUR][1000 genomes]
rs2404490	1.00[AMR][1000 genomes]
rs55670535	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57433215	1.00[EUR][1000 genomes]
rs57463742	1.00[EUR][1000 genomes]
rs57824551	0.90[AFR][1000 genomes]
rs57995632	1.00[EUR][1000 genomes]
rs59287498	1.00[EUR][1000 genomes]
rs60431508	1.00[EUR][1000 genomes]
rs6113783	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61293114	1.00[EUR][1000 genomes]
rs73900525	1.00[EUR][1000 genomes]
rs73902881	1.00[EUR][1000 genomes]
rs73902884	1.00[EUR][1000 genomes]
rs73902886	1.00[EUR][1000 genomes]
rs73904109	1.00[EUR][1000 genomes]
rs73904111	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833943	chr20:22657016-22703454	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv178857	chr20:22693441-22700741	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22696000-22701000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr20:22696800-22700600	Enhancers	Primary hematopoietic stem cells	blood
3	chr20:22697000-22700400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr20:22697000-22700600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr20:22697200-22700600	Enhancers	Stomach Mucosa	stomach
6	chr20:22697400-22700200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr20:22697400-22700200	Enhancers	Gastric	stomach
8	chr20:22697400-22700600	Enhancers	Fetal Muscle Leg	muscle
9	chr20:22697400-22700600	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr20:22697400-22701000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr20:22697800-22700000	Weak transcription	Placenta	Placenta
12	chr20:22697800-22700600	Enhancers	Hela-S3	cervix
13	chr20:22698400-22704000	Weak transcription	HSMMtube	muscle
14	chr20:22698400-22705800	Weak transcription	Right Atrium	heart
15	chr20:22698600-22700200	Enhancers	A549	lung
16	chr20:22698800-22700600	Enhancers	HUVEC	blood vessel
17	chr20:22698800-22708000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr20:22699000-22700200	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr20:22699000-22700200	Enhancers	Spleen	Spleen
20	chr20:22699200-22700000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr20:22699200-22700000	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr20:22699200-22701000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr20:22699400-22700400	Enhancers	Ovary	ovary
24	chr20:22699600-22700000	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr20:22699600-22700200	Enhancers	H1 Cell Line	embryonic stem cell
26	chr20:22699600-22700200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr20:22699600-22700200	Enhancers	Adipose Nuclei	Adipose
28	chr20:22699600-22700200	Enhancers	Fetal Muscle Trunk	muscle
29	chr20:22699600-22701600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr20:22699800-22700000	Enhancers	Dnd41	blood
31	chr20:22699800-22700200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr20:22699800-22700200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr20:22699800-22703400	Weak transcription	Lung	lung
34	chr20:22699800-22703600	Weak transcription	Left Ventricle	heart

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