Variant report

Variant	rs1203870
Chromosome Location	chr20:22534918-22534919
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1203869	0.93[ASN][1000 genomes]
rs1203878	1.00[ASN][1000 genomes]
rs1203882	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1203885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1203887	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1203888	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1203890	0.87[ASN][1000 genomes]
rs1203891	0.87[ASN][1000 genomes]
rs1203893	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1203897	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203900	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203901	1.00[ASN][1000 genomes]
rs1203903	1.00[ASN][1000 genomes]
rs1203904	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1203906	1.00[ASN][1000 genomes]
rs1203908	1.00[ASN][1000 genomes]
rs1203911	1.00[EUR][1000 genomes]
rs1203912	1.00[EUR][1000 genomes]
rs1203913	1.00[EUR][1000 genomes]
rs1203914	1.00[EUR][1000 genomes]
rs1415818	0.86[ASN][1000 genomes]
rs1538219	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1572580	0.80[ASN][1000 genomes]
rs1890207	0.80[ASN][1000 genomes]
rs1890208	0.80[ASN][1000 genomes]
rs1999862	0.80[ASN][1000 genomes]
rs4813461	0.86[ASN][1000 genomes]
rs4815118	0.80[ASN][1000 genomes]
rs4815120	0.80[ASN][1000 genomes]
rs6036139	0.80[ASN][1000 genomes]
rs6036199	1.00[TSI][hapmap]
rs6048161	0.80[ASN][1000 genomes]
rs6048170	0.80[ASN][1000 genomes]
rs6048174	0.86[ASN][1000 genomes]
rs6048175	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6048176	0.86[ASN][1000 genomes]
rs6048181	0.92[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6082736	0.80[ASN][1000 genomes]
rs6082739	0.80[ASN][1000 genomes]
rs6082740	0.86[ASN][1000 genomes]
rs6082741	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6113696	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22515000-22544200	Weak transcription	Pancreas	Pancrea
2	chr20:22529000-22536800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:22530400-22536800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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