Variant report

Variant	rs1203891
Chromosome Location	chr20:22547770-22547771
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:22547089-22548440	H1-neurons	neurons:	n/a	n/a
2	POLR2A	chr20:22547566-22548500	HepG2	liver:	n/a	n/a
3	EP300	chr20:22547280-22547791	K562	blood:	n/a	chr20:22547457-22547471 chr20:22547605-22547619
4	POLR2A	chr20:22547669-22548200	H1-neurons	neurons:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22537625..22541473-chr20:22546828..22550085,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FOXA2-2	chr20:22547321-22548523	NONHSAT078988

Variant related genes	Relation type
LINC00261	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1203869	0.81[ASN][1000 genomes]
rs1203870	0.87[ASN][1000 genomes]
rs1203878	0.87[ASN][1000 genomes]
rs1203882	1.00[CHB][hapmap];0.86[YRI][hapmap];0.87[ASN][1000 genomes]
rs1203885	1.00[ASN][1000 genomes]
rs1203887	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1203888	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1203890	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1203893	1.00[ASN][1000 genomes]
rs1203897	0.87[ASN][1000 genomes]
rs1203900	0.87[ASN][1000 genomes]
rs1203901	0.87[ASN][1000 genomes]
rs1203903	0.87[ASN][1000 genomes]
rs1203904	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1203906	0.87[ASN][1000 genomes]
rs1203908	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22540000-22548800	Weak transcription	Gastric	stomach
2	chr20:22543200-22548000	Weak transcription	K562	blood
3	chr20:22543600-22547800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr20:22544400-22548000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr20:22544600-22549400	Genic enhancers	Liver	Liver
6	chr20:22545200-22547800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
7	chr20:22545600-22548600	Weak transcription	Pancreas	Pancrea
8	chr20:22546600-22547800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr20:22546600-22548000	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr20:22546600-22548800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
11	chr20:22546800-22547800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
12	chr20:22546800-22547800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
13	chr20:22546800-22547800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
14	chr20:22547000-22548200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr20:22547000-22548400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
16	chr20:22547000-22550800	Strong transcription	HepG2	liver
17	chr20:22547200-22548000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
18	chr20:22547200-22548200	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
19	chr20:22547200-22549000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
20	chr20:22547400-22547800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell

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