Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:22539124-22546431	HepG2	liver:	n/a	n/a
2	POLR2A	chr20:22539677-22547334	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
LINC00261	TF binding region

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1203869	0.81[ASN][1000 genomes]
rs1203870	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1203878	0.87[ASN][1000 genomes]
rs1203882	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1203885	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203887	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203890	1.00[ASN][1000 genomes]
rs1203891	1.00[ASN][1000 genomes]
rs1203893	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203897	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1203900	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1203901	0.87[ASN][1000 genomes]
rs1203903	0.87[ASN][1000 genomes]
rs1203904	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1203906	0.87[ASN][1000 genomes]
rs1203908	0.87[ASN][1000 genomes]
rs1203911	1.00[EUR][1000 genomes]
rs1203912	1.00[EUR][1000 genomes]
rs1203913	1.00[EUR][1000 genomes]
rs1203914	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22540000-22548800	Weak transcription	Gastric	stomach
2	chr20:22543200-22548000	Weak transcription	K562	blood
3	chr20:22543600-22547800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr20:22544200-22547000	Genic enhancers	HepG2	liver
5	chr20:22544400-22546400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr20:22544400-22548000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr20:22544600-22549400	Genic enhancers	Liver	Liver
8	chr20:22545200-22547800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr20:22545600-22548600	Weak transcription	Pancreas	Pancrea
10	chr20:22546000-22546400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

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