Variant report

Variant	rs6048175
Chromosome Location	chr20:22522622-22522623
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1203869	0.93[ASN][1000 genomes]
rs1203870	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1203878	0.86[ASN][1000 genomes]
rs1203882	0.86[ASN][1000 genomes]
rs1203887	0.84[ASW][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap]
rs1203888	1.00[CHD][hapmap]
rs1203897	0.86[ASN][1000 genomes]
rs1203900	0.86[ASN][1000 genomes]
rs1203901	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1203903	0.86[ASN][1000 genomes]
rs1203904	0.86[ASN][1000 genomes]
rs1203906	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1203908	0.86[ASN][1000 genomes]
rs1203911	1.00[AMR][1000 genomes]
rs1415818	1.00[ASN][1000 genomes]
rs1538218	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs1538219	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1572580	0.93[ASN][1000 genomes]
rs1890207	0.93[ASN][1000 genomes]
rs1890208	0.93[ASN][1000 genomes]
rs1999862	0.93[ASN][1000 genomes]
rs2152935	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2404166	0.80[ASN][1000 genomes]
rs2896772	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4813458	0.85[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4813461	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4815118	0.93[ASN][1000 genomes]
rs4815120	0.93[ASN][1000 genomes]
rs6036136	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6036139	0.93[ASN][1000 genomes]
rs6048150	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6048151	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6048152	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6048161	0.93[ASN][1000 genomes]
rs6048170	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6048174	1.00[ASN][1000 genomes]
rs6048176	1.00[ASN][1000 genomes]
rs6048181	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6082732	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6082736	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6082739	0.93[ASN][1000 genomes]
rs6082740	1.00[ASN][1000 genomes]
rs6082741	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6113696	0.93[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22515000-22544200	Weak transcription	Pancreas	Pancrea
2	chr20:22519000-22524200	Weak transcription	HepG2	liver
3	chr20:22521800-22528800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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