Variant report

Variant	rs6082724
Chromosome Location	chr20:22487957-22487958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1415817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1538218	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2152935	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2404166	1.00[AMR][1000 genomes]
rs2896772	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4813458	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4813461	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55747978	1.00[ASN][1000 genomes]
rs6036133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036136	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6048150	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6048151	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6048152	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6048170	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6082732	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6082736	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066578	chr20:22472671-22513844	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22483800-22488000	Weak transcription	Stomach Mucosa	stomach
2	chr20:22484200-22488000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr20:22484600-22492000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr20:22485200-22488800	Weak transcription	Fetal Intestine Small	intestine
5	chr20:22485600-22488200	Weak transcription	Fetal Intestine Large	intestine
6	chr20:22486000-22489000	Weak transcription	Pancreas	Pancrea
7	chr20:22487400-22489400	Enhancers	Liver	Liver
8	chr20:22487800-22489200	Flanking Active TSS	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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