Variant report

Variant	rs6082727
Chromosome Location	chr20:22492295-22492296
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11905577	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2152936	0.82[ASN][1000 genomes]
rs2404167	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4813459	0.88[ASN][1000 genomes]
rs4815116	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4815117	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6075923	0.94[ASN][1000 genomes]
rs6075924	0.83[ASN][1000 genomes]
rs6082733	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6082734	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6082735	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6106520	0.86[ASN][1000 genomes]
rs945981	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066578	chr20:22472671-22513844	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22490000-22496000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:22490200-22492600	Weak transcription	Pancreas	Pancrea
3	chr20:22491200-22492400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr20:22491800-22494400	Enhancers	Fetal Intestine Large	intestine
5	chr20:22492000-22492400	Bivalent Enhancer	Fetal Lung	lung
6	chr20:22492000-22492800	Enhancers	Liver	Liver
7	chr20:22492000-22493400	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr20:22492200-22494200	Flanking Active TSS	HepG2	liver
9	chr20:22492200-22494400	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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