Variant report

Variant	rs4813459
Chromosome Location	chr20:22498934-22498935
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11905577	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13040491	0.88[AFR][1000 genomes]
rs2152936	0.98[AFR][1000 genomes]
rs2404167	0.98[AFR][1000 genomes]
rs4815116	0.99[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4815117	0.83[ASN][1000 genomes]
rs6036134	0.81[EUR][1000 genomes]
rs6075923	0.83[ASN][1000 genomes]
rs6082727	0.88[ASN][1000 genomes]
rs6082733	0.93[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6082734	0.83[ASN][1000 genomes]
rs6082735	0.83[ASN][1000 genomes]
rs6106520	0.94[AFR][1000 genomes]
rs945981	0.97[AFR][1000 genomes]
rs952690	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066578	chr20:22472671-22513844	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22494800-22499000	Weak transcription	Liver	Liver
2	chr20:22496200-22503800	Weak transcription	Pancreas	Pancrea
3	chr20:22496400-22501000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr20:22498000-22500000	Weak transcription	HepG2	liver
5	chr20:22498200-22503800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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