Variant report

Variant	rs11905577
Chromosome Location	chr20:22493654-22493655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2152936	0.89[EUR][1000 genomes]
rs2404167	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4813459	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4815116	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4815117	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6036134	0.95[EUR][1000 genomes]
rs6048147	0.90[EUR][1000 genomes]
rs6048148	0.92[EUR][1000 genomes]
rs6075923	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6075924	0.81[AMR][1000 genomes]
rs6082727	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6082733	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6082734	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6082735	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6106520	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs945981	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066578	chr20:22472671-22513844	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22490000-22496000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:22491800-22494400	Enhancers	Fetal Intestine Large	intestine
3	chr20:22492200-22494200	Flanking Active TSS	HepG2	liver
4	chr20:22492200-22494400	Enhancers	Fetal Intestine Small	intestine
5	chr20:22492400-22493800	Enhancers	Fetal Lung	lung
6	chr20:22492400-22493800	Enhancers	K562	blood
7	chr20:22492400-22494000	Enhancers	HUVEC	blood vessel
8	chr20:22492400-22494600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr20:22492400-22494600	Enhancers	Stomach Mucosa	stomach
10	chr20:22492600-22493800	Flanking Active TSS	A549	lung
11	chr20:22492600-22494200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr20:22492600-22494600	Enhancers	Pancreas	Pancrea
13	chr20:22492800-22494000	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr20:22493200-22493800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr20:22493400-22493800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
16	chr20:22493600-22493800	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr20:22493600-22494000	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr20:22493600-22494000	Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr20:22493600-22494800	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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