Variant report

Variant	rs945982
Chromosome Location	chr20:22534141-22534142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1055080	1.00[CEU][hapmap];0.89[GIH][hapmap];0.92[JPT][hapmap];0.93[TSI][hapmap]
rs11087388	0.88[EUR][1000 genomes]
rs1203867	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1203868	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1203873	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1203875	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1203876	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1203877	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1203879	0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1203880	0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1203881	0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1203883	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1203884	1.00[GIH][hapmap];0.86[JPT][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1203886	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1203889	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1203892	0.86[EUR][1000 genomes]
rs1203894	0.86[EUR][1000 genomes]
rs1203895	0.94[EUR][1000 genomes]
rs1203896	0.89[EUR][1000 genomes]
rs1203898	0.85[EUR][1000 genomes]
rs1203899	0.80[EUR][1000 genomes]
rs1203905	1.00[CEU][hapmap];0.94[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs1203907	1.00[CEU][hapmap];0.94[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap]
rs1209523	0.92[JPT][hapmap];0.93[TSI][hapmap]
rs13040491	0.82[AMR][1000 genomes]
rs1337919	0.92[JPT][hapmap];0.86[TSI][hapmap]
rs2021680	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2021681	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2277762	0.82[EUR][1000 genomes]
rs2277763	0.82[EUR][1000 genomes]
rs2471	0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4519600	0.85[EUR][1000 genomes]
rs4815126	0.87[AMR][1000 genomes]
rs4815127	0.86[JPT][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs6036143	0.85[EUR][1000 genomes]
rs6036144	0.83[EUR][1000 genomes]
rs6036145	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6036146	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6036152	0.81[EUR][1000 genomes]
rs6048179	0.83[EUR][1000 genomes]
rs6048180	0.83[EUR][1000 genomes]
rs6048183	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6048184	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6048186	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6048191	0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs6048192	0.82[EUR][1000 genomes]
rs6048196	0.82[EUR][1000 genomes]
rs6048197	0.88[EUR][1000 genomes]
rs6048199	0.88[EUR][1000 genomes]
rs6048200	0.88[EUR][1000 genomes]
rs6048202	0.86[EUR][1000 genomes]
rs6048205	0.92[JPT][hapmap];0.87[TSI][hapmap]
rs6048206	1.00[CEU][hapmap];0.92[JPT][hapmap];0.93[TSI][hapmap]
rs6048209	0.92[JPT][hapmap];0.86[TSI][hapmap]
rs6082743	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73300990	0.88[EUR][1000 genomes]
rs73300993	0.88[EUR][1000 genomes]
rs932560	0.86[EUR][1000 genomes]
rs952690	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22515000-22544200	Weak transcription	Pancreas	Pancrea
2	chr20:22529000-22536800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:22530400-22536800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links