Variant report

Variant	rs6048184
Chromosome Location	chr20:22537865-22537866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22537625..22541473-chr20:22546828..22550085,4	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1055080	1.00[CEU][hapmap];0.92[JPT][hapmap];0.86[TSI][hapmap]
rs11087387	0.89[EUR][1000 genomes]
rs11087388	0.98[EUR][1000 genomes]
rs1203868	0.86[EUR][1000 genomes]
rs1203873	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1203875	0.86[EUR][1000 genomes]
rs1203876	0.86[EUR][1000 genomes]
rs1203877	0.86[EUR][1000 genomes]
rs1203879	0.86[JPT][hapmap];0.86[EUR][1000 genomes]
rs1203880	0.86[JPT][hapmap];0.86[EUR][1000 genomes]
rs1203881	0.86[JPT][hapmap];0.86[EUR][1000 genomes]
rs1203883	0.86[EUR][1000 genomes]
rs1203884	0.86[JPT][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs1203886	0.86[EUR][1000 genomes]
rs1203889	0.86[EUR][1000 genomes]
rs1203892	0.84[EUR][1000 genomes]
rs1203894	0.84[EUR][1000 genomes]
rs1203895	0.92[EUR][1000 genomes]
rs1203896	0.86[EUR][1000 genomes]
rs1203898	0.83[EUR][1000 genomes]
rs1203905	1.00[CEU][hapmap];0.92[JPT][hapmap];0.93[TSI][hapmap]
rs1203907	1.00[CEU][hapmap];0.92[JPT][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs1209523	0.92[JPT][hapmap];0.86[TSI][hapmap]
rs1337919	0.92[JPT][hapmap];0.93[TSI][hapmap]
rs1974	0.80[EUR][1000 genomes]
rs2277762	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2277763	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2471	0.86[JPT][hapmap];0.86[EUR][1000 genomes]
rs4815127	0.84[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6036144	0.81[EUR][1000 genomes]
rs6036145	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6036146	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6036152	0.90[EUR][1000 genomes]
rs6048179	0.81[EUR][1000 genomes]
rs6048180	0.81[EUR][1000 genomes]
rs6048183	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6048186	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048191	0.83[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6048192	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6048196	0.84[CHB][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6048197	0.98[EUR][1000 genomes]
rs6048199	0.98[EUR][1000 genomes]
rs6048200	0.98[EUR][1000 genomes]
rs6048202	0.96[EUR][1000 genomes]
rs6048205	1.00[GIH][hapmap];0.92[JPT][hapmap];0.93[TSI][hapmap]
rs6048206	1.00[CEU][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs6048209	0.92[JPT][hapmap];0.93[TSI][hapmap]
rs6113722	0.88[EUR][1000 genomes]
rs73300990	0.98[EUR][1000 genomes]
rs73300991	0.84[EUR][1000 genomes]
rs73300993	0.98[EUR][1000 genomes]
rs932560	0.84[EUR][1000 genomes]
rs945982	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22515000-22544200	Weak transcription	Pancreas	Pancrea
2	chr20:22536200-22544800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
3	chr20:22536600-22538000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr20:22536800-22538200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr20:22536800-22539400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr20:22536800-22539600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
7	chr20:22536800-22545200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
8	chr20:22537200-22538000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
9	chr20:22537200-22538400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
10	chr20:22537200-22542400	Weak transcription	K562	blood
11	chr20:22537600-22543800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
12	chr20:22537800-22538200	Bivalent Enhancer	H9 Cell Line	embryonic stem cell

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