Variant report

Variant	rs1203895
Chromosome Location	chr20:22550426-22550427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1055080	0.84[EUR][1000 genomes]
rs11087387	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11087388	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1203868	0.86[EUR][1000 genomes]
rs1203873	0.89[EUR][1000 genomes]
rs1203875	0.95[AFR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1203876	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1203877	0.95[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1203879	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1203880	0.95[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1203881	0.95[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1203883	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1203884	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1203886	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1203889	0.98[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1203892	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1203894	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203896	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1203898	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1203899	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1203905	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1203907	0.85[EUR][1000 genomes]
rs1974	0.81[EUR][1000 genomes]
rs2277762	0.83[EUR][1000 genomes]
rs2277763	0.83[EUR][1000 genomes]
rs2471	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4815127	0.83[EUR][1000 genomes]
rs6036145	0.88[EUR][1000 genomes]
rs6036146	0.83[EUR][1000 genomes]
rs6036152	0.86[EUR][1000 genomes]
rs6048183	0.83[EUR][1000 genomes]
rs6048184	0.92[EUR][1000 genomes]
rs6048186	0.87[EUR][1000 genomes]
rs6048191	0.83[EUR][1000 genomes]
rs6048192	0.83[EUR][1000 genomes]
rs6048196	0.83[EUR][1000 genomes]
rs6048197	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6048199	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6048200	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6048202	0.92[EUR][1000 genomes]
rs6048206	0.83[EUR][1000 genomes]
rs6113722	0.84[EUR][1000 genomes]
rs73300990	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73300991	0.80[EUR][1000 genomes]
rs73300993	0.94[EUR][1000 genomes]
rs932560	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs945982	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3381101	chr20:22548552-22551550	Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22547000-22550800	Strong transcription	HepG2	liver
2	chr20:22549000-22551400	Weak transcription	K562	blood
3	chr20:22549400-22555200	Enhancers	Liver	Liver
4	chr20:22549600-22550800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
5	chr20:22549600-22553000	Weak transcription	Gastric	stomach
6	chr20:22549800-22550600	Weak transcription	A549	lung
7	chr20:22550000-22550800	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr20:22550000-22550800	Enhancers	Pancreas	Pancrea
9	chr20:22550000-22551000	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr20:22550000-22551600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
11	chr20:22550000-22551600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
12	chr20:22550200-22551600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
13	chr20:22550400-22550600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr20:22550400-22551600	Enhancers	Stomach Mucosa	stomach
15	chr20:22550400-22552800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell

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