Variant report

Variant	rs4816538
Chromosome Location	chr21:37877621-37877622
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:37875405..37877670-chr21:38120048..38122235,3	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11088351	0.80[ASN][1000 genomes]
rs1124801	0.81[ASN][1000 genomes]
rs11701001	0.81[ASN][1000 genomes]
rs13052197	0.80[ASN][1000 genomes]
rs2012586	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2187301	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2298451	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2409820	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2835367	0.81[ASN][1000 genomes]
rs2835368	0.82[ASN][1000 genomes]
rs2835369	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2835370	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2835371	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2835373	0.81[ASN][1000 genomes]
rs2835374	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2835375	0.94[ASN][1000 genomes]
rs2835376	0.81[ASN][1000 genomes]
rs2835377	0.94[ASN][1000 genomes]
rs2835379	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4817804	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4817805	0.81[ASN][1000 genomes]
rs5027467	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6517354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7278261	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7279532	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8127112	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8127879	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8130049	0.83[ASN][1000 genomes]
rs915750	0.81[ASN][1000 genomes]
rs9305585	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9305586	0.94[ASN][1000 genomes]
rs9305587	0.90[ASN][1000 genomes]
rs9974188	0.81[ASN][1000 genomes]
rs9979731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9981161	0.91[ASN][1000 genomes]
rs9982353	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37858600-37881600	Weak transcription	Right Atrium	heart
2	chr21:37860600-37882200	Weak transcription	HUVEC	blood vessel
3	chr21:37872400-37881400	Weak transcription	Esophagus	oesophagus
4	chr21:37872600-37880800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr21:37873600-37880000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr21:37874200-37878400	Weak transcription	HepG2	liver
7	chr21:37877000-37878000	Enhancers	Placenta	Placenta
8	chr21:37877000-37878200	Enhancers	Liver	Liver
9	chr21:37877000-37878800	Enhancers	Fetal Lung	lung
10	chr21:37877200-37878000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr21:37877200-37880200	Weak transcription	Fetal Kidney	kidney
12	chr21:37877400-37881000	Enhancers	GM12878-XiMat	blood
13	chr21:37877600-37878000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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