Variant report

Variant	rs9979731
Chromosome Location	chr21:37874585-37874586
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:37846674..37849601-chr21:37873414..37874939,2	MCF-7	breast:
2	chr21:37801025..37803759-chr21:37872650..37876156,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230479	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11088351	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1124801	0.84[ASN][1000 genomes]
rs11701001	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13052197	0.82[ASN][1000 genomes]
rs2012586	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2187301	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2226830	0.87[EUR][1000 genomes]
rs2298451	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2409820	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2835367	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2835368	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2835369	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2835370	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2835371	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2835373	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2835374	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2835375	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2835376	0.84[ASN][1000 genomes]
rs2835377	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2835379	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4816538	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4817804	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4817805	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs5027467	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6517354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7278261	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7279532	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8127112	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8127879	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8130049	0.81[ASN][1000 genomes]
rs915750	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9305585	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9305586	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9305587	0.94[ASN][1000 genomes]
rs9974188	0.84[ASN][1000 genomes]
rs9981161	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9982353	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37858600-37881600	Weak transcription	Right Atrium	heart
2	chr21:37860600-37882200	Weak transcription	HUVEC	blood vessel
3	chr21:37871800-37874800	Enhancers	Fetal Lung	lung
4	chr21:37872400-37881400	Weak transcription	Esophagus	oesophagus
5	chr21:37872600-37876800	Weak transcription	A549	lung
6	chr21:37872600-37880800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr21:37873400-37876800	Weak transcription	Osteobl	bone
8	chr21:37873600-37880000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr21:37874200-37878400	Weak transcription	HepG2	liver
10	chr21:37874400-37875000	Enhancers	Liver	Liver

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