Variant report
| Variant | rs4820929 |
|---|---|
| Chromosome Location | chr22:31429442-31429443 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000183963 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs12160486 | 1.00[EUR][1000 genomes] |
| rs41279971 | 1.00[EUR][1000 genomes] |
| rs4820034 | 1.00[EUR][1000 genomes] |
| rs4820917 | 1.00[EUR][1000 genomes] |
| rs4820919 | 0.87[EUR][1000 genomes] |
| rs4820920 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4820930 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4820931 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs5994357 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs5997818 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv9896 | chr22:31369204-31513933 | Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
| 2 | nsv966103 | chr22:31410201-31452981 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
