Variant report

Variant	rs4820955
Chromosome Location	chr22:31622539-31622540
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31619988..31622064-chr22:31622480..31625902,3	K562	blood:
2	chr22:31621605..31623830-chr22:31639235..31640827,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1034588	1.00[CEU][hapmap]
rs1034589	1.00[CEU][hapmap]
rs13158	1.00[CEU][hapmap]
rs1858821	1.00[CEU][hapmap]
rs2040533	1.00[CEU][hapmap]
rs2073857	1.00[CEU][hapmap]
rs2078803	1.00[CEU][hapmap]
rs2079431	1.00[CEU][hapmap]
rs2106294	1.00[CEU][hapmap]
rs2228619	1.00[CEU][hapmap]
rs2232170	0.85[CEU][hapmap]
rs2232176	0.85[CEU][hapmap]
rs2283879	1.00[CEU][hapmap]
rs2413033	1.00[CEU][hapmap]
rs2413035	1.00[CEU][hapmap]
rs2899164	0.95[CEU][hapmap]
rs4141404	1.00[CEU][hapmap]
rs4603880	1.00[CEU][hapmap]
rs4820042	1.00[CEU][hapmap]
rs4820043	1.00[CEU][hapmap]
rs4820951	1.00[CEU][hapmap]
rs4820963	1.00[CEU][hapmap]
rs5749224	1.00[CEU][hapmap]
rs5749229	1.00[CEU][hapmap]
rs5753521	1.00[CEU][hapmap]
rs5753543	1.00[CEU][hapmap]
rs5753601	0.95[CEU][hapmap]
rs5753609	0.90[CEU][hapmap]
rs5997913	1.00[CEU][hapmap]
rs714909	1.00[CEU][hapmap]
rs715510	1.00[CEU][hapmap]
rs737684	1.00[CEU][hapmap]
rs737887	1.00[CEU][hapmap]
rs737888	1.00[CEU][hapmap]
rs9606830	1.00[CEU][hapmap]
rs9606839	0.95[CEU][hapmap]
rs9609264	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459871	chr22:31551160-31680624	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	nsv588893	chr22:31551160-31680624	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1067003	chr22:31558663-31697093	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1058844	chr22:31597104-31725296	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	esv3436353	chr22:31621628-31622558	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31608800-31639800	Weak transcription	Aorta	Aorta
2	chr22:31609200-31629000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr22:31609400-31625400	Weak transcription	NHLF	lung
4	chr22:31609400-31625400	Weak transcription	Osteobl	bone
5	chr22:31609600-31623000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr22:31609600-31623000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr22:31609600-31623400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr22:31609600-31624000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr22:31609600-31624800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr22:31609600-31625000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr22:31609600-31625400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr22:31609600-31625600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr22:31609600-31627200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr22:31609600-31639200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr22:31609800-31629400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr22:31612400-31622800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr22:31613800-31622800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr22:31614000-31626600	Weak transcription	Fetal Heart	heart
19	chr22:31614400-31625200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr22:31614800-31625200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr22:31615000-31625000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr22:31615000-31625000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr22:31615000-31626400	Weak transcription	Fetal Kidney	kidney
24	chr22:31615200-31623000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr22:31615200-31625200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr22:31615200-31625200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr22:31615200-31625200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr22:31615200-31625200	Weak transcription	Left Ventricle	heart
29	chr22:31615200-31625200	Weak transcription	NHDF-Ad	bronchial
30	chr22:31615200-31625400	Weak transcription	Esophagus	oesophagus
31	chr22:31615200-31626200	Weak transcription	HSMMtube	muscle
32	chr22:31615200-31629000	Weak transcription	NH-A	brain
33	chr22:31615600-31625400	Weak transcription	NHEK	skin
34	chr22:31616200-31625000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr22:31616200-31625400	Weak transcription	HMEC	breast
36	chr22:31616600-31623200	Weak transcription	A549	lung
37	chr22:31616600-31625400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr22:31616800-31623200	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr22:31617800-31625200	Weak transcription	Brain Germinal Matrix	brain
40	chr22:31618200-31625400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr22:31618200-31625800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr22:31619200-31625600	Weak transcription	Ovary	ovary
43	chr22:31619400-31623200	Weak transcription	Colon Smooth Muscle	Colon
44	chr22:31619600-31623200	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr22:31619800-31625000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr22:31620200-31623000	Weak transcription	Primary B cells from cord blood	blood
47	chr22:31620200-31623200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr22:31620200-31623200	Weak transcription	K562	blood
49	chr22:31620200-31625000	Weak transcription	Liver	Liver
50	chr22:31620200-31625400	Weak transcription	Brain Substantia Nigra	brain

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