Variant report

Variant	rs714909
Chromosome Location	chr22:31741067-31741068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr22:31738526-31742192	GM12892	blood:	n/a	n/a
2	POLR2A	chr22:31738456-31744066	MCF-7	breast:	n/a	n/a
3	RUNX3	chr22:31739677-31741275	GM12878	blood:	n/a	n/a
4	POLR2A	chr22:31738630-31742577	GM12892	blood:	n/a	n/a
5	POLR2A	chr22:31740214-31742000	H1-hESC	embryonic stem cell:	n/a	n/a
6	POLR2A	chr22:31739492-31744047	Raji	blood:	n/a	n/a
7	POLR2A	chr22:31738497-31742182	SK-N-MC	brain:	n/a	n/a
8	POLR2A	chr22:31739705-31744036	GM19193	blood:	n/a	n/a
9	POLR2A	chr22:31738983-31744048	GM12891	blood:	n/a	n/a
10	POLR2A	chr22:31739252-31742187	GM12892	blood:	n/a	n/a
11	POLR2A	chr22:31740213-31741118	H1-hESC	embryonic stem cell:	n/a	n/a
12	POLR2A	chr22:31740327-31743901	GM12892	blood:	n/a	n/a
13	CTCF	chr22:31740681-31742604	SK-N-SH	brain:	n/a	chr22:31741938-31741951 chr22:31741935-31741953 chr22:31741938-31741951 chr22:31742361-31742370 chr22:31742043-31742056 chr22:31741936-31741952
14	MAX	chr22:31741051-31742591	H1-hESC	embryonic stem cell:	n/a	chr22:31742542-31742552 chr22:31741597-31741607 chr22:31741628-31741638 chr22:31741801-31741811 chr22:31741681-31741697
15	POLR2A	chr22:31740928-31744061	Hela-S3	cervix:	n/a	n/a
16	MAZ	chr22:31740932-31744065	IMR90	lung:	n/a	chr22:31743680-31743689 chr22:31742542-31742552 chr22:31741597-31741607 chr22:31741628-31741638 chr22:31741801-31741811 chr22:31742595-31742605 chr22:31743707-31743716 chr22:31741681-31741697
17	MAX	chr22:31739110-31741251	ECC-1	luminal epithelium:	n/a	chr22:31739995-31740004
18	POLR2A	chr22:31737335-31744213	H1-hESC	embryonic stem cell:	n/a	n/a
19	POLR2A	chr22:31738110-31744074	ECC-1	luminal epithelium:	n/a	n/a
20	POLR2A	chr22:31740327-31743929	GM18526	blood:	n/a	n/a
21	YY1	chr22:31740760-31741277	GM12878	blood:	n/a	n/a
22	POLR2A	chr22:31740202-31741601	GM12878	blood:	n/a	n/a
23	POLR2A	chr22:31739924-31744267	HepG2	liver:	n/a	n/a
24	POLR2A	chr22:31738448-31741255	HL-60	blood:	n/a	n/a
25	POLR2A	chr22:31739663-31741250	GM12891	blood:	n/a	n/a
26	STAT1	chr22:31740723-31741201	GM12878	blood:	n/a	n/a
27	MAX	chr22:31739223-31744088	MCF-7	breast:	n/a	chr22:31743680-31743689 chr22:31742542-31742552 chr22:31741597-31741607 chr22:31739995-31740004 chr22:31741628-31741638 chr22:31741801-31741811 chr22:31742595-31742605 chr22:31743707-31743716 chr22:31741681-31741697
28	POLR2A	chr22:31739395-31744061	GM12878	blood:	n/a	n/a
29	POLR2A	chr22:31739601-31741598	GM12891	blood:	n/a	n/a
30	YY1	chr22:31740713-31741141	GM12892	blood:	n/a	n/a
31	ELF1	chr22:31740229-31742133	GM12878	blood:	n/a	chr22:31741610-31741622
32	MAX	chr22:31740209-31741215	GM12878	blood:	n/a	n/a
33	E2F6	chr22:31740226-31742059	H1-hESC	embryonic stem cell:	n/a	chr22:31741941-31741951 chr22:31741929-31741941 chr22:31741945-31741955 chr22:31741948-31741957 chr22:31741590-31741600 chr22:31741627-31741636 chr22:31742049-31742058
34	POLR2A	chr22:31739278-31743963	GM18505	blood:	n/a	n/a
35	RCOR1	chr22:31739749-31742601	IMR90	lung:	n/a	n/a
36	CTCF	chr22:31741040-31741190	HCPEpiC	choroid plexus:	n/a	n/a
37	POLR2A	chr22:31739221-31743910	MCF-7	breast:	n/a	n/a
38	POLR2A	chr22:31739346-31742138	GM12891	blood:	n/a	n/a
39	EBF1	chr22:31740173-31741153	GM12878	blood:	n/a	chr22:31740735-31740746
40	STAT5A	chr22:31740746-31742106	GM12878	blood:	n/a	chr22:31741633-31741645 chr22:31741849-31741861 chr22:31741923-31741935 chr22:31741634-31741646
41	POLR2A	chr22:31738209-31744086	HL-60	blood:	n/a	n/a
42	MXI1	chr22:31739108-31744171	SK-N-SH	brain:	n/a	n/a
43	POLR2A	chr22:31740184-31742605	GM12878	blood:	n/a	n/a
44	WRNIP1	chr22:31741063-31741157	GM12878	blood:	n/a	n/a
45	POLR2A	chr22:31740250-31743895	MCF-7	breast:	n/a	n/a
46	EBF1	chr22:31740428-31741159	GM12878	blood:	n/a	chr22:31740735-31740746
47	MAX	chr22:31740998-31743174	H1-hESC	embryonic stem cell:	n/a	chr22:31742542-31742552 chr22:31741597-31741607 chr22:31741628-31741638 chr22:31741801-31741811 chr22:31742595-31742605 chr22:31741681-31741697
48	POLR2A	chr22:31739720-31741077	Hela-S3	cervix:	n/a	n/a
49	MTA3	chr22:31738941-31741335	GM12878	blood:	n/a	n/a
50	MAX	chr22:31740958-31742190	SK-N-SH	brain:	n/a	chr22:31741597-31741607 chr22:31741628-31741638 chr22:31741801-31741811 chr22:31741681-31741697

No.	Distal block	Cell Line	Cell type
1	chr22:31740767..31742486-chr9:131903487..131906077,2	MCF-7	breast:
2	chr22:31738670..31747056-chr22:31790500..31799012,36	MCF-7	breast:
3	chr22:31737798..31746418-chr22:31793074..31801662,34	MCF-7	breast:
4	chr22:31740048..31742045-chr22:32339591..32341543,2	MCF-7	breast:
5	chr22:31739411..31743940-chr22:31792561..31797746,12	K562	blood:
6	chr22:31684664..31691252-chr22:31735490..31744100,29	MCF-7	breast:
7	chr12:111125271..111126771-chr22:31740803..31742794,2	MCF-7	breast:
8	chr22:31642721..31645848-chr22:31739450..31742880,5	MCF-7	breast:
9	chr22:31683915..31694680-chr22:31733392..31744713,34	MCF-7	breast:
10	chr22:31602004..31608593-chr22:31739507..31744494,7	MCF-7	breast:
11	chr22:31739363..31741917-chr22:31884740..31886779,4	MCF-7	breast:

Variant related genes	Relation type
PATZ1	TF binding region
ENSG00000213888	TF binding region
ENSG00000228839	Chromatin interaction
ENSG00000100100	Chromatin interaction
ENSG00000128245	Chromatin interaction
ENSG00000119383	Chromatin interaction
ENSG00000122986	Chromatin interaction
ENSG00000128254	Chromatin interaction
ENSG00000185721	Chromatin interaction
ENSG00000184708	Chromatin interaction
ENSG00000182541	Chromatin interaction

Extended variants
information (count: 103 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs1034588	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1034589	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.81[EUR][1000 genomes]
rs12152166	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13054220	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13056485	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs131205	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13158	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap]
rs1858821	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2040533	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2073857	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2078803	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2079431	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2106294	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2228619	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2273249	0.95[CEU][hapmap]
rs2273251	0.95[CEU][hapmap]
rs2283879	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2283881	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2413033	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2413034	0.82[EUR][1000 genomes]
rs2413035	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2413045	1.00[MKK][hapmap]
rs2413046	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2413047	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2413049	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2899164	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs34545960	0.85[EUR][1000 genomes]
rs4141404	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4299418	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4603880	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4820042	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4820043	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4820951	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4820955	1.00[CEU][hapmap]
rs4820962	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4820963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5749224	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs5749229	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs5749243	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5749265	0.86[EUR][1000 genomes]
rs5749267	0.85[EUR][1000 genomes]
rs5749268	0.85[EUR][1000 genomes]
rs5749270	0.85[EUR][1000 genomes]
rs5749286	0.85[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap]
rs5749298	0.85[GIH][hapmap];1.00[LWK][hapmap];0.84[TSI][hapmap]
rs5753500	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs5753507	0.80[EUR][1000 genomes]
rs5753521	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5753543	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5753597	0.86[EUR][1000 genomes]
rs5753601	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs5753609	0.90[CEU][hapmap];0.81[GIH][hapmap];0.88[TSI][hapmap]
rs5753610	0.85[EUR][1000 genomes]
rs5753612	0.84[EUR][1000 genomes]
rs5753613	0.84[EUR][1000 genomes]
rs5753632	0.95[CEU][hapmap];0.88[TSI][hapmap]
rs5753639	0.95[CEU][hapmap];0.88[TSI][hapmap]
rs5753659	0.87[TSI][hapmap]
rs5753669	0.85[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap]
rs5753671	0.85[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap]
rs5994394	0.85[EUR][1000 genomes]
rs5997893	0.85[MEX][hapmap]
rs5997902	0.83[EUR][1000 genomes]
rs5997912	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs5997913	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs5997933	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5997939	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5997949	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71324184	0.93[EUR][1000 genomes]
rs715510	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7285619	0.95[CEU][hapmap];0.91[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap]
rs7287267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7293171	0.85[EUR][1000 genomes]
rs737684	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs737887	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs737888	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs738657	0.95[CEU][hapmap]
rs8135344	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8135347	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8135417	0.85[MEX][hapmap]
rs8138596	0.92[EUR][1000 genomes]
rs8141150	0.85[EUR][1000 genomes]
rs9606830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9606831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9606839	0.95[CEU][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs9606843	0.95[CEU][hapmap];0.94[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap]
rs9606848	0.85[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap]
rs9609254	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9609257	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9609264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9609265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9609266	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9609267	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9609268	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9609276	0.84[EUR][1000 genomes]
rs9609277	0.85[EUR][1000 genomes]
rs9609296	0.85[GIH][hapmap];0.91[TSI][hapmap]
rs9609297	0.82[GIH][hapmap];0.84[TSI][hapmap]
rs9609304	0.85[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap]
rs9621235	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834176	chr22:31682426-31864701	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv3333136	chr22:31704947-31758417	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	esv3425577	chr22:31740977-31743925	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs714909	MN1	cis	parietal	SCAN
rs714909	SFI1	cis	cerebellum	SCAN
rs714909	SFI1	cis	Thyroid	GTEx
rs714909	DRG1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31735800-31741200	Genic enhancers	Spleen	Spleen
2	chr22:31737800-31741400	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
3	chr22:31738000-31741200	Transcr. at gene 5' and 3'	Fetal Intestine Large	intestine
4	chr22:31738000-31741600	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr22:31738200-31741200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr22:31738200-31741200	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
7	chr22:31738200-31741400	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
8	chr22:31738200-31741800	Transcr. at gene 5' and 3'	Dnd41	blood
9	chr22:31738400-31741200	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
10	chr22:31738400-31741200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
11	chr22:31738400-31741200	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
12	chr22:31738400-31741600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
13	chr22:31738400-31743800	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr22:31738600-31741200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr22:31738600-31741200	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr22:31738600-31741200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr22:31738600-31741200	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
18	chr22:31738600-31741200	Enhancers	Placenta Amnion	Placenta Amnion
19	chr22:31738600-31741600	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr22:31738800-31741200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr22:31738800-31741200	Enhancers	Ovary	ovary
22	chr22:31738800-31741600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr22:31738800-31741600	Flanking Active TSS	HUVEC	blood vessel
24	chr22:31738800-31741800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr22:31738800-31743800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr22:31739000-31741200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr22:31739000-31741200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr22:31739000-31741200	Flanking Active TSS	Brain Angular Gyrus	brain
29	chr22:31739000-31741200	Transcr. at gene 5' and 3'	Fetal Adrenal Gland	Adrenal Gland
30	chr22:31739000-31741200	Enhancers	Left Ventricle	heart
31	chr22:31739000-31741200	Enhancers	Small Intestine	intestine
32	chr22:31739000-31741400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
33	chr22:31739000-31741400	Flanking Active TSS	Brain Anterior Caudate	brain
34	chr22:31739000-31741400	Flanking Active TSS	Rectal Smooth Muscle	rectum
35	chr22:31739000-31741600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr22:31739000-31741600	Flanking Active TSS	Duodenum Mucosa	Duodenum
37	chr22:31739000-31741600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
38	chr22:31739000-31741600	Flanking Active TSS	HSMM	muscle
39	chr22:31739200-31741200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
40	chr22:31739200-31741200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
41	chr22:31739200-31741600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
42	chr22:31739200-31741600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
43	chr22:31739200-31741600	Flanking Active TSS	Brain Cingulate Gyrus	brain
44	chr22:31739200-31741800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr22:31739400-31741200	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
46	chr22:31739400-31741200	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
47	chr22:31739400-31741200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr22:31739400-31741200	Enhancers	Psoas Muscle	Psoas
49	chr22:31739400-31741200	Transcr. at gene 5' and 3'	A549	lung
50	chr22:31739400-31741200	Transcr. at gene 5' and 3'	Hela-S3	cervix

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