Variant report

Variant	rs9609277
Chromosome Location	chr22:31799448-31799449
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:31793963..31798328-chr22:31798355..31801094,6	MCF-7	breast:
2	chr22:31798360..31800217-chr22:31808670..31810933,2	MCF-7	breast:
3	chr22:31737798..31746418-chr22:31793074..31801662,34	MCF-7	breast:
4	chr22:31795219..31797179-chr22:31797519..31799977,2	K562	blood:

Variant related genes	Relation type
ENSG00000213888	Chromatin interaction
ENSG00000185721	Chromatin interaction
ENSG00000100105	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1001599	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13054220	0.81[EUR][1000 genomes]
rs13057504	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2273249	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2273251	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2899164	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34545960	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4603880	0.85[EUR][1000 genomes]
rs5749265	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5749267	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5749268	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5749270	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5753597	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5753601	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5753609	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs5753610	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5753612	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5753613	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5753615	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5753621	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs5753628	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs5753631	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5994394	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5997969	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71324184	0.80[EUR][1000 genomes]
rs714909	0.85[EUR][1000 genomes]
rs715510	0.80[EUR][1000 genomes]
rs7285619	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7287267	0.85[EUR][1000 genomes]
rs7293171	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs738657	0.83[EUR][1000 genomes]
rs8138596	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8139625	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8141150	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9606830	0.84[EUR][1000 genomes]
rs9606831	0.85[EUR][1000 genomes]
rs9606839	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9606843	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9609254	0.83[EUR][1000 genomes]
rs9609257	0.82[EUR][1000 genomes]
rs9609264	0.84[EUR][1000 genomes]
rs9609265	0.85[EUR][1000 genomes]
rs9609266	0.84[EUR][1000 genomes]
rs9609267	0.86[EUR][1000 genomes]
rs9609268	0.88[EUR][1000 genomes]
rs9609276	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609286	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9609295	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834176	chr22:31682426-31864701	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	nsv1063634	chr22:31797004-31921254	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9609277	DRG1	Cis_1M	lymphoblastoid	RTeQTL
rs9609277	SFI1	cis	Thyroid	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31796400-31803000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:31796600-31821200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr22:31796600-31830000	Weak transcription	Stomach Mucosa	stomach
4	chr22:31796800-31799600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr22:31796800-31802600	Weak transcription	Brain Substantia Nigra	brain
6	chr22:31796800-31803000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr22:31796800-31803000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr22:31796800-31804400	Weak transcription	Colonic Mucosa	Colon
9	chr22:31796800-31805200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr22:31796800-31806600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr22:31796800-31807000	Weak transcription	Fetal Kidney	kidney
12	chr22:31796800-31807000	Weak transcription	A549	lung
13	chr22:31796800-31815800	Weak transcription	Psoas Muscle	Psoas
14	chr22:31796800-31822400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr22:31796800-31835600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr22:31797000-31801000	Strong transcription	Fetal Brain Female	brain
17	chr22:31797000-31801200	Weak transcription	HMEC	breast
18	chr22:31797000-31807000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr22:31797000-31812800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr22:31797000-31832000	Strong transcription	Fetal Muscle Leg	muscle
21	chr22:31797000-31836600	Strong transcription	Placenta	Placenta
22	chr22:31797000-31884400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr22:31797000-31884400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr22:31797200-31800400	Strong transcription	HSMM	muscle
25	chr22:31797200-31801000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr22:31797200-31802800	Weak transcription	Fetal Heart	heart
27	chr22:31797200-31803200	Weak transcription	Hela-S3	cervix
28	chr22:31797200-31803600	Strong transcription	NHEK	skin
29	chr22:31797200-31812800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr22:31797200-31812800	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr22:31797200-31814000	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr22:31797200-31817000	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr22:31797200-31826800	Strong transcription	Liver	Liver
34	chr22:31797200-31832600	Strong transcription	Fetal Intestine Small	intestine
35	chr22:31797200-31845400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr22:31797200-31846200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr22:31797200-31846400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr22:31797200-31860600	Strong transcription	Fetal Stomach	stomach
39	chr22:31797400-31809200	Weak transcription	Pancreas	Pancrea
40	chr22:31797400-31812800	Strong transcription	Fetal Thymus	thymus
41	chr22:31797400-31813000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr22:31797400-31813000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr22:31797400-31821200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr22:31797400-31846800	Strong transcription	Duodenum Mucosa	Duodenum
45	chr22:31797600-31803200	Weak transcription	Gastric	stomach
46	chr22:31797600-31803600	Strong transcription	Fetal Intestine Large	intestine
47	chr22:31797600-31806000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr22:31797600-31812400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr22:31797600-31812800	Strong transcription	Adipose Nuclei	Adipose
50	chr22:31797600-31813000	Strong transcription	Primary monocytes fromperipheralblood	blood

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