Variant report

Variant	rs9609265
Chromosome Location	chr22:31750187-31750188
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31749139..31751086-chr22:31794921..31796685,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185721	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1034588	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1034589	0.81[EUR][1000 genomes]
rs12152166	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13054220	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs131205	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1858821	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2040533	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2073857	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2078803	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2079431	0.81[EUR][1000 genomes]
rs2106294	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2228619	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2283879	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2283881	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2413033	0.81[EUR][1000 genomes]
rs2413034	0.82[EUR][1000 genomes]
rs2413035	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2413046	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2413047	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2413049	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2899164	0.87[EUR][1000 genomes]
rs34545960	0.85[EUR][1000 genomes]
rs4141404	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4299418	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4603880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4820042	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4820043	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4820951	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4820962	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4820963	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5749224	0.81[EUR][1000 genomes]
rs5749229	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5749243	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5749265	0.86[EUR][1000 genomes]
rs5749267	0.85[EUR][1000 genomes]
rs5749268	0.85[EUR][1000 genomes]
rs5749270	0.85[EUR][1000 genomes]
rs5753500	0.81[EUR][1000 genomes]
rs5753507	0.80[EUR][1000 genomes]
rs5753521	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5753543	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5753597	0.86[EUR][1000 genomes]
rs5753601	0.86[EUR][1000 genomes]
rs5753610	0.85[EUR][1000 genomes]
rs5753612	0.84[EUR][1000 genomes]
rs5753613	0.84[EUR][1000 genomes]
rs5994394	0.85[EUR][1000 genomes]
rs5997902	0.83[EUR][1000 genomes]
rs5997912	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5997913	0.82[EUR][1000 genomes]
rs5997933	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5997939	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5997949	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71324184	0.93[EUR][1000 genomes]
rs714909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs715510	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7287267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7293171	0.85[EUR][1000 genomes]
rs737684	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs737887	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs737888	0.86[EUR][1000 genomes]
rs8135344	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8135347	0.83[EUR][1000 genomes]
rs8138596	0.92[EUR][1000 genomes]
rs8141150	0.85[EUR][1000 genomes]
rs9606830	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9606831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9606839	0.85[EUR][1000 genomes]
rs9609254	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609257	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9609264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609266	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609267	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9609268	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9609276	0.84[EUR][1000 genomes]
rs9609277	0.85[EUR][1000 genomes]
rs9621235	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834176	chr22:31682426-31864701	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv3333136	chr22:31704947-31758417	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	esv1816779	chr22:31743711-31797094	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9609265	SFI1	cis	Thyroid	GTEx
rs9609265	DRG1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31744000-31762200	Weak transcription	Right Atrium	heart
2	chr22:31744200-31750400	Weak transcription	Spleen	Spleen
3	chr22:31745200-31751400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr22:31747000-31750400	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links