Variant report

Variant	rs4820994
Chromosome Location	chr22:32311619-32311620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	22:31836635-31847259..22:32304711-32312886	K562	blood:
2	22:32012966-32043914..22:32304711-32312886	K562	blood:
3	22:31803954-31807204..22:32304711-32312886	K562	blood:
4	22:32053085-32061138..22:32304711-32312886	GM12878	blood:
5	22:32304711-32312886..22:32764253-32784733	K562	blood:
6	22:32162110-32166713..22:32304711-32312886	GM12878	blood:
7	22:32304711-32312886..22:33262063-33266567	K562	blood:
8	22:31978142-31983723..22:32304711-32312886	K562	blood:
9	22:32292186-32294405..22:32304711-32312886	K562	blood:
10	22:31864703-31891033..22:32304711-32312886	K562	blood:
11	22:32170492-32188129..22:32304711-32312886	K562	blood:
12	22:32264718-32278135..22:32304711-32312886	K562	blood:

No data

Variant related genes	Relation type
ENSG00000205853	Chromatin interaction
ENSG00000184708	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000199248	Chromatin interaction
ENSG00000241878	Chromatin interaction
ENSG00000185666	Chromatin interaction
ENSG00000232218	Chromatin interaction
ENSG00000230736	Chromatin interaction
ENSG00000198089	Chromatin interaction
ENSG00000243519	Chromatin interaction
ENSG00000241954	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11703587	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs11703779	0.91[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2015580	0.87[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4820996	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4820997	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs4820998	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5753816	0.94[ASW][hapmap];0.91[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.88[TSI][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5753817	0.87[CEU][hapmap]
rs5753818	0.83[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.88[MKK][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5994449	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs5994451	0.96[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5998173	0.90[ASN][1000 genomes]
rs5998176	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32242400-32313400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr22:32276000-32315200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr22:32281000-32314800	Weak transcription	Right Atrium	heart
4	chr22:32295800-32314600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr22:32297800-32314800	Weak transcription	Brain Substantia Nigra	brain
6	chr22:32298200-32314400	Weak transcription	Fetal Brain Male	brain
7	chr22:32299400-32313000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr22:32300200-32314600	Weak transcription	Psoas Muscle	Psoas
9	chr22:32302000-32324800	Weak transcription	Fetal Thymus	thymus
10	chr22:32302400-32322600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr22:32302800-32313200	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr22:32303000-32314600	Weak transcription	Right Ventricle	heart
13	chr22:32303200-32313600	Weak transcription	Colon Smooth Muscle	Colon
14	chr22:32303200-32315000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr22:32303200-32318400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr22:32303400-32314600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr22:32304000-32314600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr22:32304000-32314800	Weak transcription	Brain Angular Gyrus	brain
19	chr22:32304200-32313200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr22:32304200-32314400	Weak transcription	Brain Hippocampus Middle	brain
21	chr22:32304200-32314600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr22:32304200-32314600	Weak transcription	Left Ventricle	heart
23	chr22:32304200-32316400	Weak transcription	Esophagus	oesophagus
24	chr22:32304400-32312200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr22:32304400-32312800	Weak transcription	Adipose Nuclei	Adipose
26	chr22:32304400-32312800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr22:32304400-32313200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr22:32304400-32314800	Weak transcription	Brain Anterior Caudate	brain
29	chr22:32304400-32314800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr22:32304400-32318000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr22:32304400-32319000	Weak transcription	Fetal Lung	lung
32	chr22:32304400-32339600	Weak transcription	Brain Germinal Matrix	brain
33	chr22:32304600-32313400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr22:32304600-32314400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr22:32305200-32321600	Weak transcription	Fetal Brain Female	brain
36	chr22:32305600-32313600	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr22:32305600-32314600	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr22:32306600-32312600	Weak transcription	Primary B cells from peripheral blood	blood
39	chr22:32306600-32313000	Weak transcription	Pancreas	Pancrea
40	chr22:32306600-32313400	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr22:32306600-32313400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr22:32306600-32314600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr22:32306800-32312600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr22:32306800-32313000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr22:32306800-32318000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr22:32306800-32318600	Weak transcription	Primary T cells from cord blood	blood
47	chr22:32307600-32318600	Weak transcription	Liver	Liver
48	chr22:32308200-32313000	Weak transcription	Spleen	Spleen
49	chr22:32308200-32313400	Weak transcription	Fetal Stomach	stomach
50	chr22:32308200-32314800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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